DRSC/TRiP Functional Genomics Resources

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Protein Alignment gammaCOP and Hmces

DIOPT Version :9

Sequence 1:NP_001263145.1 Gene:gammaCOP / 43717 FlyBaseID:FBgn0028968 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001020218.1 Gene:Hmces / 500251 RGDID:1559800 Length:353 Species:Rattus norvegicus


Alignment Length:148 Identity:35/148 - (23%)
Similarity:63/148 - (42%) Gaps:25/148 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 LIEEEDIPSEELSDSPLFTFIESCLRHKSEMVIYEAAHAIV-NLKNTNPRMLSPAFSILQLFCSS 302
            :::.|:..|:.|....:.|.....|.|..:.:.:.....:| |.:|..|..|:||..:::   ..
  Rat   215 ILDGEEAVSKWLDFGEVSTQEALKLIHPIDNITFHPVSPVVNNSRNNTPECLAPADLLVK---KE 276

  Fly   303 PKAT------LRFAAVRTLNKVAMTHPAAVTTCNLDLEGLITDSNRSVATLAITTLLKTGAESS- 360
            |||:      :::.|.::..|.....|      ..|..||...|::.:....:.|  |.||.|| 
  Rat   277 PKASGSSQRMMQWLATKSPKKEVPDSP------KKDASGLPQWSSQFLQKSPLPT--KRGASSSL 333

  Fly   361 VERLMKQISTFVAEISDE 378
            ::|.:||      |..||
  Rat   334 LDRWLKQ------EKEDE 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaCOPNP_001263145.1 SEC21 11..877 CDD:227565 35/148 (24%)
HEAT repeat 402..427 CDD:293787
HEAT repeat 439..465 CDD:293787
HEAT repeat 475..505 CDD:293787
HEAT repeat 512..538 CDD:293787
COP-gamma_platf 620..761 CDD:285908
Coatomer_g_Cpla 763..877 CDD:292991
HmcesNP_001020218.1 SRAP 1..258 CDD:396923 7/42 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 292..353 18/68 (26%)
PIP-box. /evidence=ECO:0000250|UniProtKB:Q96FZ2 332..338 2/5 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339129
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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