DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gammaCOP and copg1

DIOPT Version :9

Sequence 1:NP_001263145.1 Gene:gammaCOP / 43717 FlyBaseID:FBgn0028968 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_989174.1 Gene:copg1 / 394781 XenbaseID:XB-GENE-919993 Length:874 Species:Xenopus tropicalis


Alignment Length:875 Identity:534/875 - (61%)
Similarity:659/875 - (75%) Gaps:10/875 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EKDDEEDGPSNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDCFF 71
            :||:|..|.||.:|||||::||||.|.|||||:|||||.||||||||||||||.:.|.|||:.||
 Frog     7 KKDEESGGSSNPFQNLEKSAVLQEARLFNETPINPRKCAHILTKILYLINQGEHMGATEATEAFF 71

  Fly    72 AMTKLFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTM 136
            ||||||||.|..||||.||.|||:|||:|||||||||||||||||:|.||..|:||||.|||:||
 Frog    72 AMTKLFQSNDPTLRRMCYLTIKEMSSISEDVIIVTSSLTKDMTGKDDSYRGPAVRALCKITDSTM 136

  Fly   137 LQAVERYMKQCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYHALGLLY 201
            |||:||||||.||||.::||.:||||||.|..|:.||||||.||||||.:|||||||||||||||
 Frog   137 LQAIERYMKQAIVDKVSSVSSSALVSSLHLLKTSFDVVKRWVNEAQEAASSDNIMVQYHALGLLY 201

  Fly   202 HIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDIPSEELSDSPLFTFIESCLRHK 266
            |:||:|||:|:|:::|..|..||||:|.||:||:|.||::|||    ...|||||.|||||||:|
 Frog   202 HVRKNDRLSVNKMLSKFMRHGLKSPFAYCMMIRVASKLLDEED----GSRDSPLFDFIESCLRNK 262

  Fly   267 SEMVIYEAAHAIVNLKNTNPRMLSPAFSILQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTTCNL 331
            .|||:||||.|||||.:...:.|:||.|:||||||||||.||:|||||||||||.||:|||.|||
 Frog   263 HEMVVYEAASAIVNLPSCTAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNL 327

  Fly   332 DLEGLITDSNRSVATLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTKYPR 396
            |||.|:||||||:||||||||||||:|||::|||||||:|::||||||||||||||.|||.||||
 Frog   328 DLENLVTDSNRSIATLAITTLLKTGSESSIDRLMKQISSFMSEISDEFKVVVVQAINALCHKYPR 392

  Fly   397 KHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCEFIEDCEHVSLAVRILH 461
            ||:|:||||..|||||||.:||.:|||.||:|||||.::||:|||||||||||||...||.||||
 Frog   393 KHSVMMNFLFTMLREEGGFDYKRAIVDCIISIIEENPESKETGLSHLCEFIEDCEFTVLATRILH 457

  Fly   462 LLGKEGPFAATPSKYIRFIYNRVILESPIVRAAAVTAMAQFGASCPALLSNILVLLGRCQMDPDD 526
            |||:|||....|||||||||||||||:..|||.||:|:|:|||....:|.:|||||.||.||.|:
 Frog   458 LLGQEGPRTNNPSKYIRFIYNRVILENEEVRAGAVSALAKFGAQNEDMLPSILVLLRRCVMDDDN 522

  Fly   527 EVRDRATYYLSILNSERPELYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVPKA-AIVK 590
            |||||||:|||||...:..|...||:.....|:..||::|.::.....:..||:..||.| |.:.
 Frog   523 EVRDRATFYLSILEHRQKALNSTYILNGLTVSVPGLERALQQYTLEPSEKPFDLKSVPLATAPLA 587

  Fly   591 PVIANDVMLVTSSAPRPPKITREEESAARLAQLPGIQVLGPIHRSTA-PIQLTESETEYTVQCIK 654
            ...|::|...|...|.....:|:|....:||.:|..:.|||:.:|:| |:.||||||||.::|.|
 Frog   588 EQRADNVPAATVRQPEKLVSSRQEIFQEQLAAVPEFKELGPLFKSSAEPVALTESETEYVIRCTK 652

  Fly   655 HIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVIPCPKLPYNDLQTTFVIVEFPPDAA 719
            |.|..|:||||||.|||:|||||||.|::...||:.....:|...|.||.....:.:|..|.:..
 Frog   653 HTFVNHMVFQFDCTNTLNDQILENVTVQMEPTEGYEVICCVPAKTLSYNQPGICYTLVSVPEEDP 717

  Fly   720 NSIA-TFGATLRFVVKDCDPNTGEPESEEGYDDEYMLEDLELTVADQIQKTRKNNFQVSWDAADS 783
            |::| ||...|:|.||||||||||.: :|||:|||:|||:|:||||.|||..|.||..:||....
 Frog   718 NTLACTFSCLLKFTVKDCDPNTGEAD-DEGYEDEYVLEDIEVTVADHIQKILKPNFGAAWDEVGD 781

  Fly   784 EEWLQAEDTFVLSAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHTLLCSGTFRGGAEILVRA 848
            |  ...|:||.||.:.||::||..:||.||:.....|:.|||..:.|||..:|.||||.:|||||
 Frog   782 E--FDKEETFNLSTIKTLEEAVGNVVKFLGMQPCERSDKVPENKNAHTLYLAGVFRGGHDILVRA 844

  Fly   849 KLALSEGVTLNLTVRSTDQDVAELITAAIG 878
            ||.|::.||:.:|.||.|:...::|.|::|
 Frog   845 KLVLTDTVTMQVTARSKDEFPVDVIMASVG 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaCOPNP_001263145.1 SEC21 11..877 CDD:227565 531/868 (61%)
HEAT repeat 402..427 CDD:293787 17/24 (71%)
HEAT repeat 439..465 CDD:293787 21/25 (84%)
HEAT repeat 475..505 CDD:293787 22/29 (76%)
HEAT repeat 512..538 CDD:293787 19/25 (76%)
COP-gamma_platf 620..761 CDD:285908 73/142 (51%)
Coatomer_g_Cpla 763..877 CDD:292991 52/113 (46%)
copg1NP_989174.1 SEC21 14..869 CDD:227565 528/861 (61%)
HEAT repeat 288..313 CDD:293787 20/24 (83%)
HEAT repeat 323..354 CDD:293787 26/30 (87%)
HEAT repeat 357..385 CDD:293787 22/27 (81%)
HEAT repeat 398..423 CDD:293787 17/24 (71%)
HEAT repeat 435..461 CDD:293787 21/25 (84%)
HEAT repeat 471..501 CDD:293787 22/29 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 738 1.000 Domainoid score I106
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1013 1.000 Inparanoid score I287
OMA 1 1.010 - - QHG53896
OrthoDB 1 1.010 - - D207992at33208
OrthoFinder 1 1.000 - - FOG0002163
OrthoInspector 1 1.000 - - otm48080
Panther 1 1.100 - - O PTHR10261
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1625
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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