| Sequence 1: | NP_001263145.1 | Gene: | gammaCOP / 43717 | FlyBaseID: | FBgn0028968 | Length: | 897 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001101116.1 | Gene: | Ap3b1 / 309969 | RGDID: | 1310256 | Length: | 794 | Species: | Rattus norvegicus |
| Alignment Length: | 374 | Identity: | 70/374 - (18%) |
|---|---|---|---|
| Similarity: | 127/374 - (33%) | Gaps: | 119/374 - (31%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 326 VTTCNLDLEGLITDSNRS----------VATLAITTLLKTGAESSVERLMKQISTFVAEISDEFK 380
Fly 381 VVVVQAI--CALCTKYPRKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHL 443
Fly 444 C-----EFIEDCEHVSLAVRILHLLGKEGPFAATPSKYIRFIYNRV-ILESPIVRAAAVTAMAQF 502
Fly 503 GASC---PALLSNILVLLGRCQMDPDDEVRDR-----ATYYLSILNSERPELYKNYIIERENCSL 559
Fly 560 ALLEKSLVEHLNGDVDTRFDIS---------IVP---KAAIVKPVIANDVMLVTSSAP--RPPKI 610
Fly 611 TREEESAARLAQLPGIQVLGPIHRSTAP----------IQLTESETEYT 649 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| gammaCOP | NP_001263145.1 | SEC21 | 11..877 | CDD:227565 | 70/374 (19%) |
| HEAT repeat | 402..427 | CDD:293787 | 0/24 (0%) | ||
| HEAT repeat | 439..465 | CDD:293787 | 7/30 (23%) | ||
| HEAT repeat | 475..505 | CDD:293787 | 6/30 (20%) | ||
| HEAT repeat | 512..538 | CDD:293787 | 7/30 (23%) | ||
| COP-gamma_platf | 620..761 | CDD:285908 | 8/40 (20%) | ||
| Coatomer_g_Cpla | 763..877 | CDD:292991 | |||
| Ap3b1 | NP_001101116.1 | Adaptin_N | <1..269 | CDD:279882 | 54/294 (18%) |
| SEEEED | <413..>454 | CDD:291463 | |||
| AP3B1_C | 502..646 | CDD:291462 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.910 | |||||