DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gammaCOP and Copg1

DIOPT Version :9

Sequence 1:NP_001263145.1 Gene:gammaCOP / 43717 FlyBaseID:FBgn0028968 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001026992.1 Gene:Copg1 / 297428 RGDID:1565292 Length:874 Species:Rattus norvegicus


Alignment Length:880 Identity:536/880 - (60%)
Similarity:658/880 - (74%) Gaps:20/880 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EKDDEEDGPSNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDCFF 71
            :||:|..|.||..|:|||::||||.|.|||||:|||||.||||||||||||||.|...|||:.||
  Rat     7 KKDEESGGGSNPLQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFF 71

  Fly    72 AMTKLFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTM 136
            ||||||||.|..||||.||.|||:|.|||||||||||||||||||||.||..|:||||.|||:||
  Rat    72 AMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTM 136

  Fly   137 LQAVERYMKQCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYHALGLLY 201
            ||||||||||.||||..:||.:||||||.|...:.||||||.||||||.:|||||||||||||||
  Rat   137 LQAVERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLY 201

  Fly   202 HIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDIPSEELSDSPLFTFIESCLRHK 266
            |:||:|||||||:::|.||..||||:|.||:||:|.|.:||||    ...|||||.|||||||:|
  Rat   202 HVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASKQLEEED----GSRDSPLFDFIESCLRNK 262

  Fly   267 SEMVIYEAAHAIVNLKNTNPRMLSPAFSILQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTTCNL 331
            .|||:||||.|||||...:.:.|:||.|:||||||||||.||:|||||||||||.||:|||.|||
  Rat   263 HEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNL 327

  Fly   332 DLEGLITDSNRSVATLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTKYPR 396
            |||.|:||||||:||||||||||||:|||::|||||||:|::||||||||||||||.|||.||||
  Rat   328 DLENLVTDSNRSIATLAITTLLKTGSESSIDRLMKQISSFMSEISDEFKVVVVQAISALCQKYPR 392

  Fly   397 KHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCEFIEDCEHVSLAVRILH 461
            ||.||||||..|||||||.|||.:|||.||:|||||:::||:|||||||||||||...||.||||
  Rat   393 KHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENSESKETGLSHLCEFIEDCEFTVLATRILH 457

  Fly   462 LLGKEGPFAATPSKYIRFIYNRVILESPIVRAAAVTAMAQFGASCPALLSNILVLLGRCQMDPDD 526
            |||:|||....||||||||||||:||...|||.||:|:|:|||....:|.:|||||.||.||.|:
  Rat   458 LLGQEGPKTNNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEEMLPSILVLLKRCVMDDDN 522

  Fly   527 EVRDRATYYLSILNSERPELYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVPKAAI--- 588
            |||||||:||::|..::..|...||:.....|:..|||:|.::.....:..||:..||.|..   
  Rat   523 EVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLEKALQQYTLEPSEKPFDLKSVPLATTPMT 587

  Fly   589 -VKPVIANDVMLVTSSAPRPPKI--TREEESAARLAQLPGIQVLGPIHRST-APIQLTESETEYT 649
             .:|...:     |::..:|.|:  ||:|....:||.:|..|.|||:.:|: .|:.||||||||.
  Rat   588 EQRPESTS-----TAAVKQPEKVAATRQEIFQEQLAAVPEFQGLGPLFKSSPEPVALTESETEYV 647

  Fly   650 VQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVIPCPKLPYNDLQTTFVIVEF 714
            ::|.||.|..|:||||||.|||:||.||||.|::...|.:...:.:|...||||...|.:.:|..
  Rat   648 IRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLSYVPVRSLPYNQPGTCYTLVAL 712

  Fly   715 PPDAANSIA-TFGATLRFVVKDCDPNTGEPESEEGYDDEYMLEDLELTVADQIQKTRKNNFQVSW 778
            |.:...::| ||...::|.||||||||||.: ||||:|||:|||||:||||.|||..|.||:.:|
  Rat   713 PKEDPTAVACTFSCVMKFTVKDCDPNTGEID-EEGYEDEYVLEDLEVTVADHIQKVMKVNFEAAW 776

  Fly   779 DAADSEEWLQAEDTFVLSAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHTLLCSGTFRGGAE 843
            |....|  .:.|:||.||.:.||::||..|||.||:.....|:.|||..:.||||.:|.||||.:
  Rat   777 DEVGDE--FEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPENKNTHTLLLAGVFRGGHD 839

  Fly   844 ILVRAKLALSEGVTLNLTVRSTDQDVAELITAAIG 878
            ||||::|.|.:.||:.:|.||:::...::|.|::|
  Rat   840 ILVRSRLLLLDTVTMQVTARSSEELPVDIILASVG 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaCOPNP_001263145.1 SEC21 11..877 CDD:227565 533/873 (61%)
HEAT repeat 402..427 CDD:293787 18/24 (75%)
HEAT repeat 439..465 CDD:293787 21/25 (84%)
HEAT repeat 475..505 CDD:293787 21/29 (72%)
HEAT repeat 512..538 CDD:293787 19/25 (76%)
COP-gamma_platf 620..761 CDD:285908 73/142 (51%)
Coatomer_g_Cpla 763..877 CDD:292991 51/113 (45%)
Copg1NP_001026992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21 6/13 (46%)
SEC21 7..869 CDD:227565 533/873 (61%)
HEAT 1 64..101 26/36 (72%)
HEAT 2 283..320 28/36 (78%)
HEAT repeat 288..313 CDD:293787 20/24 (83%)
HEAT 3 322..355 27/32 (84%)
HEAT repeat 323..354 CDD:293787 26/30 (87%)
HEAT 4 356..392 28/35 (80%)
HEAT repeat 363..397 CDD:293787 27/33 (82%)
HEAT repeat 398..423 CDD:293787 18/24 (75%)
HEAT repeat 435..461 CDD:293787 21/25 (84%)
HEAT repeat 471..501 CDD:293787 21/29 (72%)
Interaction with ZNF289/ARFGAP2. /evidence=ECO:0000250 609..874 128/267 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 734 1.000 Domainoid score I98
eggNOG 1 0.900 - - E1_COG5240
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1013 1.000 Inparanoid score I271
OMA 1 1.010 - - QHG53896
OrthoDB 1 1.010 - - D207992at33208
OrthoFinder 1 1.000 - - FOG0002163
OrthoInspector 1 1.000 - - otm45023
orthoMCL 1 0.900 - - OOG6_101348
Panther 1 1.100 - - O PTHR10261
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1625
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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