| Sequence 1: | NP_001263145.1 | Gene: | gammaCOP / 43717 | FlyBaseID: | FBgn0028968 | Length: | 897 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001022937.1 | Gene: | apb-1 / 175376 | WormBaseID: | WBGene00000160 | Length: | 955 | Species: | Caenorhabditis elegans |
| Alignment Length: | 668 | Identity: | 129/668 - (19%) |
|---|---|---|---|
| Similarity: | 269/668 - (40%) | Gaps: | 96/668 - (14%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 16 SNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDCFFAMTKLFQSK 80
Fly 81 DVVLRRMVYLGIKELSSIAEDV-IIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTMLQAVERYM 144
Fly 145 KQCIVDKNAAVSCAALVSSLRLANTAGDVVKR--WANEAQEALNSDNIMVQYHALGLLYHIRKSD 207
Fly 208 RL--AVSKLVNKLTRGSLKSPY--AVCMLIRIACKLIEEEDIPSEELSDSPLFTFIESCLRHKSE 268
Fly 269 MVIYEAAHAIVNLKNTNP----------RMLSPAFSILQLFCSSPKATLRFAAVRTLNKVAMTHP 323
Fly 324 AAVTTCNLDLEGLITDSNRS--VATLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQA 386
Fly 387 I--CALCTKYPRKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCEFIED 449
Fly 450 CEHVSLAVRILHLLGKEGPFAATPSKYIRFIYNR-VILESPI---------VRAAAVTAMAQFGA 504
Fly 505 SCP----ALLSNILVLLGRCQMDPDDEVRDRATYYLSILNSERPELYKNYIIERE---NCSLALL 562
Fly 563 EKSLVEHLNGDVDTRFDISIVPKAAIVKPVIA-----NDV--------MLVTSSAPR-------- 606
Fly 607 -PPKITREEESAARLAQL 623 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| gammaCOP | NP_001263145.1 | SEC21 | 11..877 | CDD:227565 | 129/668 (19%) |
| HEAT repeat | 402..427 | CDD:293787 | 3/24 (13%) | ||
| HEAT repeat | 439..465 | CDD:293787 | 4/25 (16%) | ||
| HEAT repeat | 475..505 | CDD:293787 | 9/39 (23%) | ||
| HEAT repeat | 512..538 | CDD:293787 | 8/25 (32%) | ||
| COP-gamma_platf | 620..761 | CDD:285908 | 2/4 (50%) | ||
| Coatomer_g_Cpla | 763..877 | CDD:292991 | |||
| apb-1 | NP_001022937.1 | Adaptin_N | 11..531 | CDD:279882 | 102/555 (18%) |
| HEAT repeat | 51..75 | CDD:293787 | 7/23 (30%) | ||
| HEAT repeat | 87..114 | CDD:293787 | 7/26 (27%) | ||
| Cnd1 | 99..265 | CDD:289487 | 35/171 (20%) | ||
| HEAT repeat | 121..151 | CDD:293787 | 6/29 (21%) | ||
| HEAT repeat | 160..186 | CDD:293787 | 6/25 (24%) | ||
| HEAT repeat | 197..224 | CDD:293787 | 7/26 (27%) | ||
| HEAT repeat | 389..413 | CDD:293787 | 4/26 (15%) | ||
| HEAT repeat | 425..454 | CDD:293787 | 6/38 (16%) | ||
| HEAT repeat | 461..491 | CDD:293787 | 6/29 (21%) | ||
| HEAT repeat | 502..538 | CDD:293787 | 12/38 (32%) | ||
| Alpha_adaptinC2 | 736..834 | CDD:197886 | |||
| B2-adapt-app_C | 844..955 | CDD:198088 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.910 | |||||