DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl1 and si:ch73-127m5.1

DIOPT Version :10

Sequence 1:NP_524607.1 Gene:Loxl1 / 43712 FlyBaseID:FBgn0039848 Length:360 Species:Drosophila melanogaster
Sequence 2:XP_009305107.1 Gene:si:ch73-127m5.1 / 799158 ZFINID:ZDB-GENE-130531-25 Length:835 Species:Danio rerio


Alignment Length:288 Identity:76/288 - (26%)
Similarity:110/288 - (38%) Gaps:58/288 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 EGRVEVSFDFGASWGTICSTSWSMREANVVCRQLGLGYASKASQGTEHGDSRKYPWGMVGTLCRG 114
            ||||||..|  ..|||||...|...:|.|||||||||...||......|.. ..|..:....|.|
Zfish   237 EGRVEVFHD--GRWGTICDDQWDDMDAEVVCRQLGLGGIPKAWSWAHFGQG-SGPIQLDAVQCTG 298

  Fly   115 TERRLADCIRESHYPNLCNARNHNVSIAACVSHSADLEIGLVDIER--TARLEAVPMSRLTCAME 177
            .|..|.:|.......:.|   :|........:...|..:.|||.:.  ..||| |..||     :
Zfish   299 NELSLDECRHSGWEQHNC---DHMEDAGVSCNPYTDGVVRLVDGDNPWEGRLE-VYHSR-----D 354

  Fly   178 EHCVSADAYEIRRTNPHAARILLRFSVKASNVGTADVSPYANYKEWVWHQCHRHYHSMNVFATFD 242
            ...|..|::    |.|||..:..:...:    |.|:|:|...:.|           ...:....|
Zfish   355 WGTVCDDSW----TEPHAQVVCRQLGFR----GGAEVAPAGAFGE-----------GTGLILLDD 400

  Fly   243 VYDLNYRKVAQGHKASFCLMDSECRPGVRQKYTCGNTTQGISVGCADTYTDVLDCQWVDVTRVPI 307
            |       ..:|.::|..    ||:.||..::.|.::.   .||        :.|..|:...||:
Zfish   401 V-------ECEGTESSLL----ECKHGVWGRHDCSHSE---DVG--------IRCHRVENNEVPL 443

  Fly   308 ---NRRYILRVALNPEYKLGEISFENNG 332
               :...::|:|.....|.|.:....||
Zfish   444 APESTGPLVRLAGGDSRKEGRVEVFLNG 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl1NP_524607.1 SR 50..136 CDD:214555 33/85 (39%)
Lysyl_oxidase 149..351 CDD:460102 42/189 (22%)
si:ch73-127m5.1XP_009305107.1 KR 49..112 CDD:412161
SR 118..217 CDD:214555
SR 227..327 CDD:214555 34/95 (36%)
SR 334..433 CDD:214555 31/145 (21%)
SR 452..551 CDD:214555 6/20 (30%)
Tryp_SPc 582..826 CDD:238113
Blue background indicates that the domain is not in the aligned region.

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