DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl1 and loxl2

DIOPT Version :9

Sequence 1:NP_524607.1 Gene:Loxl1 / 43712 FlyBaseID:FBgn0039848 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001135520.1 Gene:loxl2 / 100216062 XenbaseID:XB-GENE-1010775 Length:767 Species:Xenopus tropicalis


Alignment Length:320 Identity:138/320 - (43%)
Similarity:177/320 - (55%) Gaps:12/320 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 NKAALAGIQVLREGRVEVSFDFGAS--WGTICSTSWSMREANVVCRQLGLGYASKASQGTEH--G 98
            |:..|:|.:...||||||..:...:  |||:||.:|...||.:||||||||:||.|.|.|.:  |
 Frog   426 NQVRLSGGRHPTEGRVEVLMERNGTLRWGTVCSDTWGTMEAMIVCRQLGLGFASHAFQETWYWQG 490

  Fly    99 DSRKYPWGMVGTLCRGTERRLADCIRESHYPNLCNARNHNVSIAACVSHSADLEIGLVDIERTAR 163
            |.......|.|..|.|||..||.|..:....|.........:..:||..:.||.:....:|:|..
 Frog   491 DINADDVVMSGVKCSGTEMSLAHCRHDGANINCPRGGGRFAAGVSCVETAPDLVLNAALVEQTTY 555

  Fly   164 LEAVPMSRLTCAMEEHCVSADAYEIRRTNPHAA-RILLRFSVKASNVGTADVSPYANYKEWVWHQ 227
            ||..||..|.||.||.|:|:.|   .||:|... |.|||||.:..|.|.||..|......|:||.
 Frog   556 LEDRPMFMLQCAHEEQCLSSSA---DRTSPTTGYRRLLRFSSQIHNNGQADFRPKTGRHSWIWHD 617

  Fly   228 CHRHYHSMNVFATFDVYDLNYRKVAQGHKASFCLMDSECRPGVRQKYTCGN-TTQGISVGCADTY 291
            ||||||||.||..:|:..||..|||:||||||||.||||...|:::|.|.| ..|||:|||.|.|
 Frog   618 CHRHYHSMEVFTHYDLLSLNGTKVAEGHKASFCLEDSECETDVQKQYACANFGEQGITVGCWDVY 682

  Fly   292 TDVLDCQWVDVTRVPINRRYILRVALNPEYKLGEISFENNGAECLLDYTGVRQTTRIFNC 351
            ...:||||||:|.|... .|..:|.:||..::.|..:.||..:|...|.|.|  ..::||
 Frog   683 RHDIDCQWVDITDVAPG-DYFFQVIINPNQEVAESDYTNNIMKCRCRYDGHR--IWMYNC 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl1NP_524607.1 SRCR 50..137 CDD:278931 39/90 (43%)
SR 50..136 CDD:214555 39/89 (44%)
Lysyl_oxidase 149..343 CDD:279521 91/195 (47%)
loxl2NP_001135520.1 SR 51..152 CDD:214555
SR 194..295 CDD:214555
SR 319..418 CDD:214555
SR 428..536 CDD:214555 41/107 (38%)
Lysyl-oxidase like. /evidence=ECO:0000250 541..744 94/205 (46%)
Lysyl_oxidase 541..741 CDD:366506 94/205 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D376277at33208
OrthoFinder 1 1.000 - - FOG0000389
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45817
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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