DRSC/TRiP Functional Genomics Resources

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Protein Alignment PNPase and Hmu

DIOPT Version :9

Sequence 1:NP_001097990.2 Gene:PNPase / 43710 FlyBaseID:FBgn0039846 Length:771 Species:Drosophila melanogaster
Sequence 2:NP_477159.1 Gene:Hmu / 43294 FlyBaseID:FBgn0015737 Length:579 Species:Drosophila melanogaster


Alignment Length:260 Identity:56/260 - (21%)
Similarity:78/260 - (30%) Gaps:101/260 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 VEVNFSNGRNMTFSSGRLAR----------------FANGTAVCQMGDTAVMVTAVAKAKPNPGQ 90
            |..:|:|      .||||.:                ||||.|:....|..|:...          
  Fly   198 VFASFAN------PSGRLFKYNRSKNVSEVLLDELAFANGLALSPNEDFIVVAET---------- 246

  Fly    91 GFMPLVVDYRLKNAASGR----------IPMNFMRRELGPSEKEIL------------------- 126
            |.|.| ..|.||.|.:|:          :|.|     |.|..:.|.                   
  Fly   247 GAMRL-TKYHLKGAKAGQSEVFVDGLPGLPDN-----LTPDAEGIWVPLVQSADSEHPNGFTLFT 305

  Fly   127 ---SARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH------SPDVLAINAASMALSLSDIPWN 182
               |.||....:..||...:|....:..|..:...||      |..|||....::.    .:.||
  Fly   306 RFPSVRLFLARMLALFELPFRYLNSVYPNKFSQRFVHFVGHMESITVLAPKRTTVV----RVDWN 366

  Fly   183 GPIGAVRVGLCDG-----------------EVLINPTRRELQTSQLDLVVSATKQNLVVMLEGKG 230
            |.|    ||...|                 ..|.:||.:.|...:.......|.:...|.:||:|
  Fly   367 GNI----VGSLHGFDKSAATVSHVLEFQDFLFLGSPTNQYLARVKSPKAKQPTLKVRNVRVEGEG 427

  Fly   231  230
              Fly   428  427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PNPaseNP_001097990.2 PRK11824 42..751 CDD:236995 56/260 (22%)
HmuNP_477159.1 YvrE 61..>287 CDD:225921 27/110 (25%)
Str_synth 173..258 CDD:304606 19/76 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1185
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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