DRSC/TRiP Functional Genomics Resources

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Protein Alignment PNPase and BE0003N10.1

DIOPT Version :9

Sequence 1:NP_001097990.2 Gene:PNPase / 43710 FlyBaseID:FBgn0039846 Length:771 Species:Drosophila melanogaster
Sequence 2:NP_497324.3 Gene:BE0003N10.1 / 175269 WormBaseID:WBGene00015266 Length:738 Species:Caenorhabditis elegans


Alignment Length:720 Identity:298/720 - (41%)
Similarity:415/720 - (57%) Gaps:18/720 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 GEAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAV-AKAKPNPGQGFMPLVVDYR 100
            |...||.|:|.....:...:|.|||||:.|.|...||.|||.|.| .|:|...|.| :||.|:||
 Worm    23 GREQSVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQGDGSG-VPLQVEYR 86

  Fly   101 LKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLF-HKDYRTETQLVCNMLAMDAVHSPDV 164
            ...:|.||||.||:||||..|:.|||.:|.||||:|||. ...|  |||::|..||:|......:
 Worm    87 PSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLPGNSY--ETQIICKPLALDENADQIM 149

  Fly   165 LAINAASMALSLSDIPWNGPIGAVRVG-LCDGEVLINPTRRELQTSQLDLVVSATKQNLVVMLEG 228
            |.|||||.||.:|...:|||:.|:||. ...|:..:|||:.||:.:.|:|:|:..|....||:|.
 Worm   150 LGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMRKHEKTVMIEL 214

  Fly   229 KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPELGKAVRSMCEMRLR 293
            .|.....:.|..|:....|....:...:|:|     ..:.:.|:|:|....|.:.:......|:.
 Worm   215 DGRESSAEHLEHALDVAFRHVAKLHEAMEQL-----TAEPKDELASEDFSGLERLLEETARERIY 274

  Fly   294 EIFQDSTHDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQTSRTIFRELIFERGLRCDG 358
            .:..|:.|||:|||..:..:...:..:  .:|...|...|...::...:.:.|:.....|:||||
 Worm   275 YVITDAGHDKISRDMEIKAIFEEICAE--KAFQTCEKDAIYRTYSTLVKKVLRDTTLRTGIRCDG 337

  Fly   359 RDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNFML 423
            |..|:.|.|:..|||||.|||.::||||||||..||:.||..:|...||:|.| .|..:.|:|||
 Worm   338 RRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQL-LGSQRKKSFML 401

  Fly   424 HYEFPPYATGEVGRIGPVGRREMGHGALAERSLLPTLPNDYPFTVRLTSEVLESNGSSSMASVCG 488
            |||||.:|..|.|....:.|||:|||||||:||....|.|:|:..||..:|||||||||||||||
 Worm   402 HYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLFPADFPYATRLACQVLESNGSSSMASVCG 466

  Fly   489 GSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGF 553
            |||||.|||||:...||||||||::.....:||    ||:||||||||||.||||.||||||.||
 Worm   467 GSLALFDAGVPMKNAAAGVAIGLISDEAEPETK----YRVLTDILGIEDYAGDMDFKVAGTRDGF 527

  Fly   554 TAIQADLKIPGIPLKVVMESLQKATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQ 618
            ||.|.|:|..|:..:.:.||||.|.....::|..||.....||:..|.:.|:.:::.:||.:|..
 Worm   528 TAAQLDVKNGGLTRRQLTESLQAARAGIDHVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVT 592

  Fly   619 LIGPSGLHMKRIYLETGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTA 683
            |...:|.:.|.|..|||..::|.||.|.::.|..:..:.:|.:::...:......|..||.|..|
 Worm   593 LFRNNGYNCKLIEAETGVKISAEDEAHISLLAQDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQA 657

  Fly   684 KITELRDTGVMVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSR 748
            :|.|:.:.||.:.|..|.....:.|:.|....:.||..|.|::|.::.|.:||||..:|.:||||
 Worm   658 EIVEIIERGVYLTLPGSSRRIFMSNNHLSLNPVRHPDVLGLKIGDKMSVHWFGRDEHTGNIRLSR 722

  Fly   749 KVLQG 753
            |.|.|
 Worm   723 KTLAG 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PNPaseNP_001097990.2 PRK11824 42..751 CDD:236995 294/711 (41%)
BE0003N10.1NP_497324.3 PRK11824 25..723 CDD:236995 293/712 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166941
Domainoid 1 1.000 178 1.000 Domainoid score I2134
eggNOG 1 0.900 - - E1_COG1185
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12404
Inparanoid 1 1.050 507 1.000 Inparanoid score I726
Isobase 1 0.950 - 0 Normalized mean entropy S3439
OMA 1 1.010 - - QHG58167
OrthoDB 1 1.010 - - D175537at33208
OrthoFinder 1 1.000 - - FOG0005289
OrthoInspector 1 1.000 - - oto19100
orthoMCL 1 0.900 - - OOG6_102161
Panther 1 1.100 - - LDO PTHR11252
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4216
SonicParanoid 1 1.000 - - X4288
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

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