DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and gabrd

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_700099.5 Gene:gabrd / 571422 ZFINID:ZDB-GENE-081105-170 Length:459 Species:Danio rerio


Alignment Length:440 Identity:110/440 - (25%)
Similarity:211/440 - (47%) Gaps:70/440 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 PMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMG-ESELKKMLWVP 165
            |:::.....:..:.::..:::::|:...|:..:.|.||::     |.....:| :|.....||:|
Zfish    64 PVNVAMAIEVASIDHISEANMEYTMTVFLRQSWRDDRLSY-----NHTNKTLGLDSRFVDKLWLP 123

  Fly   166 HIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMY 230
            ..|:.|.:::.....:.:::|..:.|:|.:|.|:|:.:|:.|.|:..|:|.|||:|...|||:.|
Zfish   124 DTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSSRITSTVACDMDLTKYPMDEQECMLDLESYGY 188

  Fly   231 NTTLVQLHWETDNPV--SFDK----QLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISF 289
            ::..:..||.....:  ..||    |..:|:|..:..:.|         :.|    .|.:..:|.
Zfish   189 SSEDIVYHWSESQKLIHGLDKLELSQFTITDYRFVTEMMN---------FKS----AGRFPRLSL 240

  Fly   290 TVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKV 354
            ...|.|..|.|:|..::|||::|.:||||||:.....|||.:||.||:|:..||.:|..::|.:.
Zfish   241 RFQLRRNRGVYIIQSYMPSILLVAMSWVSFWISQSAVPARVSLGITTVLTMTTLMVSARSSLPRA 305

  Fly   355 SYVTMSEVWFLVCTIFIFGSLVEFAFV--NTIWRRNNDLQLK-KRTTKYIVKSTFVPHLKKHRRH 416
            |.:...:|:|.:|.:|:|.:|:|:||.  |..:.:....::| .:..:.:||:            
Zfish   306 SAIKALDVYFWICYVFVFAALIEYAFAHYNADYSKKEKAKVKTNKNAESMVKN------------ 358

  Fly   417 GYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSR-----EDSAISLDEQDETSTSES 476
              .:....:.::|...|::             .::|....||     :.:|.:.|..:||.|..:
Zfish   359 --GKQAMVLFSLSVAGMNQ-------------GLLISNRQSRSHRASDAAAAAADPHEETETRSA 408

  Fly   477 S------DSSKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFW 520
            :      :||:||..   ....|.:... ||...|.|||.:|.|.|.::|
Zfish   409 TSRRAQKESSEEKKC---CKCKPIDADT-IDIYARAVFPFTFAVVNVIYW 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 110/440 (25%)
gabrdXP_700099.5 LIC 45..457 CDD:273305 110/440 (25%)
Neur_chan_LBD 45..247 CDD:280998 45/200 (23%)
Neur_chan_memb 256..454 CDD:280999 60/228 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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