DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and gabrr1

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001020724.1 Gene:gabrr1 / 568984 ZFINID:ZDB-GENE-040724-212 Length:466 Species:Danio rerio


Alignment Length:454 Identity:115/454 - (25%)
Similarity:208/454 - (45%) Gaps:98/454 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 GEEVPMDIYARFYIYVMKNLDS---SDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELK 159
            |..:|:.:..:     :::||:   .|:.||:...|:..:.|.||:|.|   |..|.:..:..|.
Zfish    79 GPAIPVGVDVQ-----LESLDTISEVDMDFTMTLYLRHYWKDARLSFPS---NTNQSMTFDGRLV 135

  Fly   160 KMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTT 224
            |.:|||.||..:.:.|.:..|:.::.:..::|:|.||.|.|:..|..|.|:...||.|.|.|...
Zfish   136 KKIWVPDIFFVHSKRSFIHDTTTENVMLRVHPDGKVLYSLRVTVTSMCNMDLSHFPLDTQTCSLE 200

  Fly   225 LESWMYNTTLVQLHW-------ETDNPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEG 282
            :||:.|....:.|:|       :||:.:|. .|..:.|::....|         ..|.|.|....
Zfish   201 IESYAYTDDDLMLYWKRGNKSLQTDDKISL-SQFLIQEFHTTTKL---------AFYSSTGWYNR 255

  Fly   283 NYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQ 347
            .|  |:||  |.|.:.::::..:.|:.::|.:||||||:.....|||..||.||:|:..|:....
Zfish   256 LY--INFT--LRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGV 316

  Fly   348 ENNLMKVSYVTMSEVWFLVCTIFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKK 412
            ..::.:|||:...:::..|..:|:|.|::|:|.||.:    :.||.:|..::             
Zfish   317 NASMPRVSYIKAVDIYLWVSFVFVFLSVIEYAAVNYL----STLQERKERSQ------------- 364

  Fly   413 HRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETST---- 473
                            ::..:..|||     :|....:::..|.|         |.|..:|    
Zfish   365 ----------------NSRQLPCTCG-----MTHPGQMMMSSSYS---------EMDMMTTGNYG 399

  Fly   474 -SESSDSSK-----------EKPAQTFATMTPKEVSL---WIDRKMRFVFPLSFIVFNALFWTL 522
             ||.||:.:           |:.||..|..|...:::   .||:..|.:||.::.:||.::|::
Zfish   400 MSELSDTKQEQFLVHLVMDNEQGAQRPAVTTSSTLNIDTHAIDKYSRVIFPGAYTLFNIIYWSI 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 115/452 (25%)
gabrr1NP_001020724.1 LIC 44..464 CDD:273305 115/454 (25%)
LGIC_ECD 81..266 CDD:355788 57/206 (28%)
Cys-loop 183..197 CDD:349787 6/13 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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