DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and gabrb3

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_005166136.1 Gene:gabrb3 / 566922 ZFINID:ZDB-GENE-101102-2 Length:532 Species:Danio rerio


Alignment Length:436 Identity:113/436 - (25%)
Similarity:207/436 - (47%) Gaps:57/436 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 DLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDE 185
            ::.:|:....|..:.|.|||::....|    :..::.:...||||..:..|::.|.|.|.:.|:.
Zfish   113 NMDYTLTMYFQQYWRDKRLAYTGIPLN----LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNR 173

  Fly   186 LTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWE-TDNPVSFDK 249
            :..::|:||||...|:..|..|.|:.:::|.|||.|...:||:.|.|..::.:|: .:..|:...
Zfish   174 MIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGETAVTGVS 238

  Fly   250 QLQLTEYNLIG-SLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVT 313
            :::|.:::::. .|.:.::..|.          |.|..:|.:..|.|.:||:::..::|||:|..
Zfish   239 RIELPQFSIVDYKLVSRNVVFST----------GAYPRLSLSFKLKRNIGYFILQTYMPSILITI 293

  Fly   314 ISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVEF 378
            :||||||:..|.:.||..||.||:|:..|::......|.|:.||...:::.:.|.:|:|.:|:|:
Zfish   294 LSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEY 358

  Fly   379 AFVNTIW----------------RRNNDLQLKKRTTKY----------IVKSTFVPHLKKHRRHG 417
            ||||.|:                :.|||      ..||          ..|.:.|....:.:.|.
Zfish   359 AFVNYIFFGRGPQMQKKLAEKAEKANND------RNKYDGNKSVQEGGNCKPSSVKQSNQVQGHR 417

  Fly   418 YRR-TDSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSK 481
            :.| .||..:.:.||.........|.:.|..:......|:..::|.|...:|.....|...::..
Zfish   418 HSRGVDSQGNILLTTLEIHNEVAGNEITTSVSEARNSTSMVFDNSGIQYRKQSTARHSMDRNAQS 482

  Fly   482 EKPAQTFATMTPK-------EVSLWIDRKMRFVFPLSFIVFNALFW 520
            :||.....:...|       :|:. |||..|.:||..|.:||.::|
Zfish   483 KKPRLRRRSSQLKIKIPDLTDVNA-IDRWSRIIFPAVFSLFNLIYW 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 113/436 (26%)
gabrb3XP_005166136.1 LIC 61..530 CDD:273305 113/436 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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