DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and gabra4

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001017822.1 Gene:gabra4 / 550520 ZFINID:ZDB-GENE-050417-360 Length:557 Species:Danio rerio


Alignment Length:543 Identity:139/543 - (25%)
Similarity:212/543 - (39%) Gaps:158/543 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 YD-RMVP----PVVHNKDGEEVPMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSY 144
            || |:.|    ||.      ||..|||...:    ..:...::::|:....:..::|.||.:.  
Zfish    59 YDNRLRPGFGGPVT------EVKTDIYVTSF----GPVSDVEMEYTMDVFFRQTWVDRRLRYE-- 111

  Fly   145 LPNRRQPIMGESELKKM-------LWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQ 202
                     |..|:.::       :|.|..|..|.:.|.....:|.:.|..|..|||:|.:.||.
Zfish   112 ---------GPVEILRLNNLMVTKVWTPDTFFRNGKRSVAHNMTAPNRLFRIMKNGTILYTMRLT 167

  Fly   203 ATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDNPVSFD---KQLQLTEYNLIGSLYN 264
            .:..|.|....||.|...|.....|:.|..|.:...|......|.:   :...|.:|:|||.   
Zfish   168 ISAECPMRLVNFPMDGHSCPLKFGSYAYPKTEMIYTWTKGPQHSVEVPPESSSLVQYDLIGQ--- 229

  Fly   265 ESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPAR 329
               .||:|:..   |:.|.|.:::....|.|::||::|..::|.||.|.:|.||||:..:..|||
Zfish   230 ---TVSSETVK---SITGEYVVMTVYFHLKRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPAR 288

  Fly   330 TTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFL-VCTIFIFGSLVEFAFVN----------- 382
            |..|.||:|:..|||:|..::|.||||.|..: ||: ||..|:|.:|:|||.||           
Zfish   289 TVFGITTVLTMTTLSISARHSLPKVSYATAMD-WFIAVCFAFVFSALIEFAAVNYFTNAQAERAK 352

  Fly   383 -----------------------TIWRRNNDL--QLKKRTTKYIVKSTFVPHLKKHRRHGYRRTD 422
                                   .:.::|:|.  .|:||     |.|...|..:..:.   :||:
Zfish   353 RKQAKAAAAASVKSSTGKNKDTEEVLQQNSDTNGNLRKR-----VNSNIQPQAESKKT---QRTE 409

  Fly   423 STMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSS------- 480
            :  |:.|..|..|             |.:...|.|..:...|...|...|.|.:|.|:       
Zfish   410 A--SSKSGASSSK-------------PTLTSQSSSTSEGTSSFSSQSRLSPSSASQSNAAASSSS 459

  Fly   481 -----------------KEKPAQTFATMTP--------------KEVSLW-------------ID 501
                             |..|..|.|...|              ||....             ||
Zfish   460 ASKTTPPAPPSTPTVPDKPSPGTTPAGSAPLHHLLGPKLENIKKKEAKAQPQPAAPATGGASKID 524

  Fly   502 RKMRFVFPLSFIVFNALFWTLVY 524
            ...|.:||:||..||.::| :||
Zfish   525 EYARILFPVSFGAFNMVYW-VVY 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 137/539 (25%)
gabra4NP_001017822.1 Neur_chan_LBD 49..256 CDD:280998 55/226 (24%)
Neur_chan_memb 263..543 CDD:280999 78/303 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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