DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and nAChRalpha4

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster


Alignment Length:547 Identity:108/547 - (19%)
Similarity:186/547 - (34%) Gaps:180/547 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 YDRMVPPVVHNKDGEEVPMDIYARFYIYV-MKNLDSSDLQFTVQGL-LQLRYLDPRLAFSS---- 143
            |:::|.|||:..|..:|.:.:.....|.| :||      |.....| ::..:.|.:|.:..    
  Fly    23 YNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKN------QIMTTNLWVEQSWYDYKLRWEPKEYG 81

  Fly   144 -----YLPNRRQPIMGESELKKMLWVPHIFLTNE---QASTVLGTSAKDELTSIYPNGTVLTSTR 200
                 ::|:..            :|.|.|.|.|.   .....|.|.|     :||..|.|.....
  Fly    82 GVHMLHVPSDH------------IWRPDIVLYNNADGNFEVTLATKA-----TIYSEGLVEWKPP 129

  Fly   201 LQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQL-HWET---DNPVSFDKQL----QLTEYN 257
            ......|.::.:.||||||.|.....||.|:...|.| |.:.   .|.|:....|    ...|::
  Fly   130 AIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWD 194

  Fly   258 LIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQ 322
            ::     |...|.||.:  :...:..|..|:|.:.:.|:..:|.::..:|.:.|..::.::|:|.
  Fly   195 IL-----EVPAVRNEKF--YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLP 252

  Fly   323 ADQTPARTTLGCTTLLS-----FITLSLSQENNLM-----KVSYVTMSEVWFLVCT--------- 368
            :| :..:.||..:.|:|     .:.:.:....:|:     |.....|..|...:|.         
  Fly   253 SD-SGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHF 316

  Fly   369 --------------IFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKST---FVPHLKKHRRH 416
                          :|| ..|..|.|:.   |...:.:    |:|.::|.|   |.|:       
  Fly   317 RSPQTHKMAPWVKRVFI-DFLPAFLFIK---RPTYNFE----TSKLLLKDTHACFYPY------- 366

  Fly   417 GYRRTDSTMSTMSTTSMDK--TCGPNNTV--------ITIETPIIIGGSLS-----------RED 460
                       .|.|::|:  :.|.||::        ||...|  .|||..           ..|
  Fly   367 -----------YSATNIDRLVSSGYNNSLPKEDLSQSITANGP--FGGSCQVHGPVPPLTHCSSD 418

  Fly   461 SAISLDEQD-----------------------------------ETSTSESSDSSKEKPAQTFAT 490
            ...::.:.|                                   ...|....||:|.|....:..
  Fly   419 EIAAVPDMDIGPLGMKSPILNNPAFSHSKCLPKIHKSCFCVRFIAEHTKMQEDSTKVKEDWKYVA 483

  Fly   491 MTPKEVSLWIDRKMRFVFPLSFIVFNA 517
            |....:.|||       |.|:.:|..|
  Fly   484 MVLDRLFLWI-------FTLAVVVGTA 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 108/547 (20%)
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 108/547 (20%)
Neur_chan_LBD 12..227 CDD:280998 54/233 (23%)
Neur_chan_memb 234..505 CDD:280999 53/306 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447269
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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