Protein Alignment pHCl-2 and gabra6a

DIOPT Version :9

• Sequence 1: NP_001303470.1
• Gene: pHCl-2 / 43703
• FlyBaseID: FBgn0039840
• Length: 526
• Species: Drosophila melanogaster
• Sequence 2: XP_005173169.1
• Gene: gabra6a / 393704
• ZFINID: ZDB-GENE-040426-1692
• Length: 435
• Species: Danio rerio
• Alignment Length: 443
• Identity: 112/443 - (25%)
• Similarity: 188/443 - (42%)
• Gaps: 97/443 - (21%)

  Fly   100 EVPMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWV 164
            ||..||:...:    ..:...:::||:....:..::|.||||..  |....|:  .:.:...:|.
Zfish    52 EVKTDIFVTSF----GPVSDVNMEFTMDMFFRQMWVDERLAFQG--PIEILPL--NNRMVDKIWT 108

  Fly   165 PHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWM 229
            |..|..|.:.|.....::.::|..|..||||..:.||..:..|.|..:.||.|...|.....|:.
Zfish   109 PDTFFRNARKSLAHNMTSPNKLFRIMQNGTVFYTMRLTVSAVCPMVLRDFPMDGHTCPLYFGSYA 173

  Fly   230 YNTTLVQLHWETDNPVSFD---KQLQLTEYNLIG-SLYNESIRVSNESYMSHGSLEGNYSIISFT 290
            |....:...|......|.|   :...|.:|:|:| :|:.|:.:.|.          |.||:....
Zfish   174 YTNREIVYTWRKGLEASVDFPPESSSLLQYDLLGQTLFTETYKFST----------GLYSVQVVH 228

  Fly   291 VLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVS 355
            ..|.|::||::|..::|.||:|.:|.||||:..:..||||..|.||:|:..|||:|..::|.|||
Zfish   229 FYLQRKLGYHLIQTYIPLIMVVVLSQVSFWINKESVPARTVAGITTVLTMTTLSISARSSLPKVS 293

  Fly   356 YVTMSEVWFL-VCTIFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYR 419
            |.|..: ||: ||..|:..:|||||.||                   ..:|...:.:.|:.
Zfish   294 YATAMD-WFIAVCFAFVASALVEFAAVN-------------------YYATLEANRENHKL---- 334

  Fly   420 RTDSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEKP 484
                               |..:::              |..|...|::.|:..|::|..|:::.
Zfish   335 -------------------PRGSIV--------------ESQAQGSDDEPESPQSDTSAYSRKRR 366

  Fly   485 AQTFATMTPKEVSLW-----------------IDRKMRFVFPLSFIVFNALFW 520
            ....:......|.::                 ||:..|.:|||:|.:||.::|
Zfish   367 GYPVSEAPRTRVPIFLQGSAFPPNMMLAGTSAIDKYSRILFPLAFGIFNLVYW 419

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pHCl-2	NP_001303470.1	LIC	46..522	CDD:273305	112/443 (25%)
gabra6a	XP_005173169.1	LIC	2..422	CDD:273305	112/443 (25%)
		Neur_chan_LBD	28..234	CDD:280998	48/199 (24%)
		Neur_chan_memb	242..419	CDD:280999	59/233 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.900