DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and nAChRbeta3

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster


Alignment Length:499 Identity:104/499 - (20%)
Similarity:162/499 - (32%) Gaps:148/499 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 KNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYI-YVMKNLDSSDLQFTVQG 128
            |||...||..|...|..  .||..|.||.     :..|.::.....: |:  ::|..:.:.|...
  Fly    44 KNANVKALDRLHAGLFT--NYDSDVQPVF-----QGTPTNVSLEMVVTYI--DIDELNGKLTTHC 99

  Fly   129 LLQLRYLD-PRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELT----- 187
            .|.||:.| .|:...|...|..|..:..||    :|.|.|.|.|....   |..|:.::|     
  Fly   100 WLNLRWRDEERVWQPSQYDNITQITLKSSE----VWTPQITLFNGDEG---GLMAETQVTLSHDG 157

  Fly   188 -------SIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDNPV 245
                   ::|             |.||.:|...:|.|:|.||..:.||.....|.:........:
  Fly   158 HFRWMPPAVY-------------TAYCELNMLNWPHDKQSCKLKIGSWGLKVVLPENGTARGESL 209

  Fly   246 SFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIM 310
            ..|..:|..|:.::.|             .:|...:..|..:.:|:...|....|....:.|:..
  Fly   210 DHDDLVQSPEWEIVDS-------------RAHFVSQDYYGYMEYTLTAQRRSSMYTAVIYTPASC 261

  Fly   311 IVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSL 375
            ||.::..:|||.......:..:                |.|:               .|.|...|
  Fly   262 IVILALSAFWLPPHMGGEKIMI----------------NGLL---------------IIVIAAFL 295

  Fly   376 VEFAFVNTIWRRNNDLQLKKRTTK--YIVKSTFVPHL------KKHRR----------HGYRRTD 422
            :.||.:..:...|..|.:...:|.  |:..||.|..|      .||:|          ||:..|.
  Fly   296 MYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLPEALRKLLHGHLGTW 360

  Fly   423 STMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEKPAQT 487
            ..:|..|||.                          |..|....|.|| ...|.:|..:..|...
  Fly   361 LLLSVFSTTG--------------------------ESQAEKTKEMDE-HPYEEADEQESSPLGI 398

  Fly   488 FATMTPKE---------VSLWIDRKMRFVFPLSFIVFNALFWTL 522
            ..|..|..         ::..:||       :||:.|:..|..|
  Fly   399 NHTEVPGAKANQFDWALLATAVDR-------ISFVSFSLAFLIL 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 103/497 (21%)
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 104/499 (21%)
Neur_chan_LBD 52..247 CDD:280998 49/236 (21%)
Neur_chan_memb 255..434 CDD:280999 47/243 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447273
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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