DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Gabra6

DIOPT Version :10

Sequence 1:NP_651861.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_068613.2 Gene:Gabra6 / 29708 RGDID:61861 Length:453 Species:Rattus norvegicus


Alignment Length:464 Identity:124/464 - (26%)
Similarity:194/464 - (41%) Gaps:119/464 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 EVPMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKM--- 161
            ||..|||...:    ..:...::::|:....:..:.|.||.|.           |.:|:..:   
  Rat    57 EVKTDIYVTSF----GPVSDVEMEYTMDVFFRQTWTDERLKFK-----------GPAEILSLNNL 106

  Fly   162 ----LWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCK 222
                :|.|..|..|.:.|.....:..::|..:..|||:|.:.||.....|.|....||.|...|.
  Rat   107 MVSKIWTPDTFFQNGKKSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRLVNFPMDGHACP 171

  Fly   223 TTLESWMYNTTLVQLHWETDNPVSF---DKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNY 284
            ....|:.|..:.:...|:.....|.   ::...|.:|:|||.      .||:|:..|:   .|.|
  Rat   172 LKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQ------TVSSETIKSN---TGEY 227

  Fly   285 SIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQEN 349
            .|::....|.|::||::|..:.|.||.|.:|.||||:..:..||||..|.||:|:..|||:|..:
  Rat   228 VIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARH 292

  Fly   350 NLMKVSYVTMSEVWFL-VCTIFIFGSLVEFAFVNTIWRRNNDLQ----------------LKKRT 397
            :|.||||.|..: ||: ||..|:|.:|:|||.||..    .:||                .|.:|
  Rat   293 SLPKVSYATAMD-WFIAVCFAFVFSALIEFAAVNYF----TNLQSQKAERQAQTAAKPPVAKSKT 352

  Fly   398 T-----KYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPI------- 450
            |     :.:|.|....||||      |.:..|:..:.::...|..  :.|.|...||:       
  Rat   353 TESLEAEIVVHSDSKYHLKK------RISSLTLPIVPSSEASKVL--SRTPILPSTPVTPPLLLP 409

  Fly   451 IIGGSLSREDSAISLDEQDETSTSESSDSSKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVF 515
            .|||                        :||                  ||:..|.:||::|..|
  Rat   410 AIGG------------------------TSK------------------IDQYSRILFPVAFAGF 432

  Fly   516 NALFWTLVY 524
            |.::| :||
  Rat   433 NLVYW-IVY 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_651861.1 LIC 46..522 CDD:455710 122/460 (27%)
Gabra6NP_068613.2 LIC 34..440 CDD:455710 122/462 (26%)
LGIC_ECD 42..239 CDD:475126 47/205 (23%)

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