DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Gabrr1

DIOPT Version :10

Sequence 1:NP_651861.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_058987.3 Gene:Gabrr1 / 29694 RGDID:61900 Length:480 Species:Rattus norvegicus


Alignment Length:438 Identity:102/438 - (23%)
Similarity:205/438 - (46%) Gaps:67/438 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 GEEVPMDIYARFYIYVMKNLDS---SDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELK 159
            |..:|:.:..:     :::|||   .|:.||:...|:..:.|.||:|.|   .....:..:..|.
  Rat    95 GPAIPVGVDVQ-----VESLDSISEVDMDFTMTLYLRHYWKDERLSFPS---TNNLSMTFDGRLV 151

  Fly   160 KMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTT 224
            |.:|||.:|..:.:.|.:..|:..:.:..:.|:|.||.|.|:..|..|.|:|.:||.|.|.|...
  Rat   152 KKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLE 216

  Fly   225 LESWMYNTTLVQLHWETDN-PVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIIS 288
            :||:.|....:.|:|:..| .:..|:::.|::: ||...:       ..:.::..|..|.|:.:.
  Rat   217 IESYAYTEDDLMLYWKKGNDSLKTDERISLSQF-LIQEFH-------TTTKLAFYSSTGWYNRLY 273

  Fly   289 FTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMK 353
            ....|.|.:.::::..:.|:.::|.:||||||:.....|||..||.||:|:..|:......::.:
  Rat   274 INFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPR 338

  Fly   354 VSYVTMSEVWFLVCTIFIFGSLVEFAFVN--TIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRH 416
            |||:...:::..|..:|:|.|::|:|.||  |..:...:.:|:::                    
  Rat   339 VSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLREK-------------------- 383

  Fly   417 GYRRTDSTMSTMSTTSMDKTCG-PNNTVITIETPII------IGGSLSREDSAISLDEQDETSTS 474
                            :..||| |....:.:::...      :||.:  .::....|......|.
  Rat   384 ----------------ISCTCGLPQPRGVMLDSSYSDGEVNDLGGYM--PENGEKPDRMMVQLTL 430

  Fly   475 ESSDSSKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFWTL 522
            .|...|.::.:|..:.::.:..:..||:..|.:||.::|:||.::|::
  Rat   431 ASERGSPQRKSQRGSYVSMRINTHAIDKYSRIIFPAAYILFNLIYWSI 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_651861.1 LIC 46..522 CDD:455710 102/436 (23%)
Gabrr1NP_058987.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..67
LIC 76..479 CDD:455710 102/438 (23%)
LGIC_ECD_GABAAR_rho 97..282 CDD:349806 51/200 (26%)
Cys-loop 199..213 CDD:349806 7/13 (54%)
Blue background indicates that the domain is not in the aligned region.

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