DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Gabrd

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_058985.1 Gene:Gabrd / 29689 RGDID:61901 Length:449 Species:Rattus norvegicus


Alignment Length:431 Identity:112/431 - (25%)
Similarity:205/431 - (47%) Gaps:61/431 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 PMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMG-ESELKKMLWVP 165
            |:::.....:..:.::..:::::|:...|...:.|.||::     |.....:| :|.....||:|
  Rat    63 PVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLSY-----NHTNETLGLDSRFVDKLWLP 122

  Fly   166 HIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMY 230
            ..|:.|.:::.....:.:::|..:.|:|.:|.|.|:.:|:.|.|:..|:|.|||:|...|||:.|
  Rat   123 DTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVACDMDLAKYPMDEQECMLDLESYGY 187

  Fly   231 NTTLVQLHW-ETDNPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLT 294
            ::..:..:| |....:....:|||.::.:      .|.|.:.|  :.:....|.:..:|....|.
  Rat   188 SSEDIVYYWSENQEQIHGLDRLQLAQFTI------TSYRFTTE--LMNFKSAGQFPRLSLHFQLR 244

  Fly   295 REVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTM 359
            |..|.|:|..::||:::|.:||||||:.....|||.:||.||:|:..||.:|..::|.:.|.:..
  Rat   245 RNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVSARSSLPRASAIKA 309

  Fly   360 SEVWFLVCTIFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDST 424
            .:|:|.:|.:|:|.:|||:||.:.    |.|.: |||..|  ||.|      |.|.....|....
  Rat   310 LDVYFWICYVFVFAALVEYAFAHF----NADYR-KKRKAK--VKVT------KPRAEMDVRNAIV 361

  Fly   425 MSTMSTTSMDKTCGPNNTVITIETPII-----IGGSLSREDSAISLDEQDETSTSESSDS---SK 481
            :.::|...:.:           |..|.     :.|:|.....::.::.:.|..:......   |:
  Rat   362 LFSLSAAGVSQ-----------ELAISRRQGRVPGNLMGSYRSVEVEAKKEGGSRPGGPGGIRSR 415

  Fly   482 EKP--AQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFW 520
            .||  |.|            ||...|.|||.:|...|.::|
  Rat   416 LKPIDADT------------IDIYARAVFPAAFAAVNIIYW 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 112/431 (26%)
GabrdNP_058985.1 LGIC_ECD 63..246 CDD:355788 44/195 (23%)
LGIC_TM 249..>337 CDD:365787 35/91 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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