DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and GABRG1

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_775807.2 Gene:GABRG1 / 2565 HGNCID:4086 Length:465 Species:Homo sapiens


Alignment Length:552 Identity:129/552 - (23%)
Similarity:222/552 - (40%) Gaps:125/552 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDTLGIFVLISYLGLSSAAGV---------HLGDL--------QQNLAANGSVVVSP-LNTTDAF 47
            |..|..|:...:|..|.:.||         |||:.        .::|..|.:.|::| ::..|..
Human     1 MGPLKAFLFSPFLLRSQSRGVRLVFLLLTLHLGNCVDKADDEDDEDLTVNKTWVLAPKIHEGDIT 65

  Fly    48 SVSINLSQSTVNNCPSLKNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIY 112
            .:..:|.|.                            ||..:.|.:..:     |..|....|:.
Human    66 QILNSLLQG----------------------------YDNKLRPDIGVR-----PTVIETDVYVN 97

  Fly   113 VMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTV 177
            .:..:|..::::|:..:....:.|.||.|:|.:    :.:|..|.:...:|:|..|..|.:.|..
Human    98 SIGPVDPINMEYTIDIIFAQTWFDSRLKFNSTM----KVLMLNSNMVGKIWIPDTFFRNSRKSDA 158

  Fly   178 LGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETD 242
            ...:..:.|..|:.:|.||.:.||.....|::....||.||..|.....|:.|....::..|:..
Human   159 HWITTPNRLLRIWNDGRVLYTLRLTINAECYLQLHNFPMDEHSCPLEFSSYGYPKNEIEYKWKKP 223

  Fly   243 N-PVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFL 306
            : .|:..|..:|.::..:|        :.|.:.::| ::.|:|.|::....|:|.:||:.|..::
Human   224 SVEVADPKYWRLYQFAFVG--------LRNSTEITH-TISGDYVIMTIFFDLSRRMGYFTIQTYI 279

  Fly   307 PSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFI 371
            |.|:.|.:||||||:..|..||||:||.||:|:..|||.....:|.||||||..:::..||.||:
Human   280 PCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFV 344

  Fly   372 FGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKT 436
            |.:|:|:.                 |..|...:.......|.|:           ..:..||...
Human   345 FAALMEYG-----------------TLHYFTSNQKGKTATKDRK-----------LKNKASMTPG 381

  Fly   437 CGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTS--ESSDSSKEKPAQTFATMTPKEVSLW 499
            ..|.:|:|.:..              ||:.::|:....  |..|.     |..|..........|
Human   382 LHPGSTLIPMNN--------------ISVPQEDDYGYQCLEGKDC-----ASFFCCFEDCRTGSW 427

  Fly   500 -----------IDRKMRFVFPLSFIVFNALFW 520
                       ||...|..||.:|.:||.::|
Human   428 REGRIHIRIAKIDSYSRIFFPTAFALFNLVYW 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 114/489 (23%)
GABRG1NP_775807.2 LIC 66..462 CDD:273305 114/487 (23%)
LGIC_ECD_GABAAR_G 88..269 CDD:349801 42/193 (22%)
Cys-loop 188..202 CDD:349801 5/13 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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