DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and GABRA5

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_000801.1 Gene:GABRA5 / 2558 HGNCID:4079 Length:462 Species:Homo sapiens


Alignment Length:497 Identity:140/497 - (28%)
Similarity:228/497 - (45%) Gaps:92/497 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 FSVSINLSQS-TVNNCP--SLKNAESMALMELLTRLTAPC--RYDRMVPPVVHNKDGE---EVPM 103
            |.:|:|||.. ..:..|  |:|: |:...:.:.||:....  .||..:.|.:    ||   :|..
Human    18 FCISMNLSSHFGFSQMPTSSVKD-ETNDNITIFTRILDGLLDGYDNRLRPGL----GERITQVRT 77

  Fly   104 DIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIF 168
            |||...:    ..:..:::::|:....:..:.|.||.|..  |.:|.|:  .:.|...:|.|..|
Human    78 DIYVTSF----GPVSDTEMEYTIDVFFRQSWKDERLRFKG--PMQRLPL--NNLLASKIWTPDTF 134

  Fly   169 LTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTT 233
            ..|.:.|.....:..::|..:..:||:|.:.||..:..|.|..:.||.|...|.....|:.|..:
Human   135 FHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNS 199

  Fly   234 LVQLHW---ETDNPVSFDKQLQLTEYNLIG-SLYNESIRVSNESYMSHGSLEGNYSIISFTVLLT 294
            .|...|   .|.:.|..:...:|.:|:|:| ::..|:|..|.          |.|:|::....|.
Human   200 EVVYVWTNGSTKSVVVAEDGSRLNQYHLMGQTVGTENISTST----------GEYTIMTAHFHLK 254

  Fly   295 REVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTM 359
            |::||:||..:||.||.|.:|.|||||..:..||||..|.||:|:..|||:|..|:|.||:|.|.
Human   255 RKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATA 319

  Fly   360 SEVWFL-VCTIFIFGSLVEFAFVNTIWRRN---------NDLQLKKRTTKYIVKSTFVPHLKKHR 414
            .: ||: ||..|:|.:|:|||.||...:|.         ...::||:....:.|||         
Human   320 MD-WFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKREVILNKST--------- 374

  Fly   415 RHGYRRTDSTMSTMSTTSMDKT-CGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSD 478
             :.:  |...||.......::| .|.:||.           |:|.:.|      :::||.|:.:.
Human   375 -NAF--TTGKMSHPPNIPKEQTPAGTSNTT-----------SVSVKPS------EEKTSESKKTY 419

  Fly   479 SSKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFW 520
            :|..|                ||:..|.|||:.|..||.::|
Human   420 NSISK----------------IDKMSRIVFPVLFGTFNLVYW 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 140/497 (28%)
GABRA5NP_000801.1 LGIC_ECD_GABAAR_A5 58..256 CDD:349839 52/219 (24%)
LGIC_TM_GABAAR_alpha 259..445 CDD:349854 74/231 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 377..412 10/53 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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