DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pHCl-2 and Gabrb2

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_008765857.1 Gene:Gabrb2 / 25451 RGDID:2650 Length:506 Species:Rattus norvegicus


Alignment Length:511 Identity:129/511 - (25%)
Similarity:231/511 - (45%) Gaps:88/511 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 SLKNAESMALME-----LLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIYVMKNLDSSDL 122
            |:.:..:|:|::     ||.......|.|...|||....:.:...:|:.:..      |:|    
  Rat    26 SVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEV------NMD---- 80

  Fly   123 QFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELT 187
             :|:....|..:.|.||:::....|    :..::.:...||||..:..|::.|.|.|.:.|:.:.
  Rat    81 -YTLTMYFQQAWRDKRLSYNVIPLN----LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMI 140

  Fly   188 SIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWE-TDNPVSFDKQL 251
            .::|:||||...|:..|..|.|:.:::|.|||.|...:||:.|.|..::.:|. .||.|:...::
  Rat   141 RLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKI 205

  Fly   252 QLTEYNLIG-SLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTIS 315
            :|.:::::. .|..:.:..|.          |:|..:|.:..|.|.:||:::..::|||:|..:|
  Rat   206 ELPQFSIVDYKLITKKVVFST----------GSYPRLSLSFKLKRNIGYFILQTYMPSILITILS 260

  Fly   316 WVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVEFAF 380
            |||||:..|.:.||..||.||:|:..|::......|.|:.||...:::.:.|.:|:|.:|:|:|.
  Rat   261 WVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYAL 325

  Fly   381 VNTIWRRNNDLQLKKRTTKYI----------VKSTFVPHLKKHRRHGYRRTDSTMST----MSTT 431
            ||.|:......:.||...|..          |...|...:|::|.......|.|..|    .|..
  Rat   326 VNYIFFGRGPQRQKKAAEKAANANNEKMRLDVNKIFYKDIKQNRTQYQSLWDPTRWTTYYHFSLY 390

  Fly   432 SMDKTCGPNNTVI--TIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEK------PAQTF 488
            .||    |:..::  |:|    |...::..::.:.|.  |..||..:.|:|..:      |..:|
  Rat   391 MMD----PHENILLSTLE----IKNEMATSEAVMGLG--DPRSTMLAYDASSIQYRKAGLPRHSF 445

  Fly   489 AT------MTPKEVSL------------------WIDRKMRFVFPLSFIVFNALFW 520
            ..      :..|:..|                  .|||..|..||:.|..||.::|
  Rat   446 GRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYW 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 129/511 (25%)
Gabrb2XP_008765857.1 LIC 9..504 CDD:273305 129/511 (25%)
Neur_chan_LBD 40..242 CDD:280998 55/226 (24%)
Neur_chan_memb 249..501 CDD:280999 68/261 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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