DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Gabrp

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_666129.1 Gene:Gabrp / 216643 MGIID:2387597 Length:440 Species:Mus musculus


Alignment Length:489 Identity:130/489 - (26%)
Similarity:218/489 - (44%) Gaps:97/489 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 VSINLSQSTVNNCPSLKNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIYV 113
            |::.:|:|...:.|..:|            |||  .|::.:.|   |..|:  |:.|.....|..
Mouse    26 VNVEVSRSDKLSLPGFEN------------LTA--GYNKFLRP---NFGGD--PVRIALTLDIAS 71

  Fly   114 MKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVL 178
            :.::..|::.:|....|:.|:.||||.|..   |:...:  ::.|.:.||||..::...:.|.:.
Mouse    72 ISSISESNMDYTATIYLRQRWTDPRLVFEG---NKSFTL--DARLVEFLWVPDTYIVESKKSFLH 131

  Fly   179 GTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDN 243
            ..:..:.|..::.|||||.:.|:..|:.|.|:..|:|.|.|.||..||||.|:...|:..|...|
Mouse   132 EVTVGNRLIRLFSNGTVLYALRITTTVTCNMDLSKYPMDTQTCKLQLESWGYDGNDVEFSWLRGN 196

  Fly   244 -PVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLP 307
             .|...:.|:|.:|.:  ..|...:.||.:.       .|||:.:.....|.|.|.|::::.::|
Mouse   197 DSVRGLENLRLAQYTI--QQYFTLVTVSQQE-------TGNYTRLVLQFELRRNVLYFILETYVP 252

  Fly   308 SIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVS-YVTMSEVWFLVCTIFI 371
            |..:|.:||||||:..|..||||.:|.||:||..||.:....:|...: ::...:|:..:|..|:
Mouse   253 STFLVVLSWVSFWISLDSVPARTCIGVTTVLSMTTLMIGSRTSLPNTNCFIKAIDVYLGICFSFV 317

  Fly   372 FGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKT 436
            ||:|:|:|                           |.|.            |::..|:.    |.
Mouse   318 FGALLEYA---------------------------VAHY------------SSLQQMAV----KD 339

  Fly   437 CGPNNTVITIETPIIIGGSLS---REDSAISLDEQDET-----STSESSDSSK----EKPAQT-- 487
            .||......:....||..|:|   |:.|..|::...:.     .|.::||..|    ||.::.  
Mouse   340 RGPAKDSEEVNITNIINSSISSFKRKISFASIEISGDNVNYSDLTMKASDKFKFVFREKISRIID 404

  Fly   488 -FATMTPKEVSLWIDRKMRFVFPLSFIVFNALFW 520
             |....|..|    ||..:.:|||.|::.|..:|
Mouse   405 YFTIQNPSNV----DRYSKLLFPLIFMLANVFYW 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 130/489 (27%)
GabrpNP_666129.1 Neur_chan_LBD 41..242 CDD:280998 63/233 (27%)
LIC 43..437 CDD:273305 126/472 (27%)
Neur_chan_memb 249..434 CDD:280999 60/231 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4221
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.850

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