DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Gabrp

DIOPT Version :10

Sequence 1:NP_651861.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_666129.1 Gene:Gabrp / 216643 MGIID:2387597 Length:440 Species:Mus musculus


Alignment Length:489 Identity:130/489 - (26%)
Similarity:218/489 - (44%) Gaps:97/489 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 VSINLSQSTVNNCPSLKNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIYV 113
            |::.:|:|...:.|..:|            |||  .|::.:.|   |..|:  |:.|.....|..
Mouse    26 VNVEVSRSDKLSLPGFEN------------LTA--GYNKFLRP---NFGGD--PVRIALTLDIAS 71

  Fly   114 MKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVL 178
            :.::..|::.:|....|:.|:.||||.|..   |:...:  ::.|.:.||||..::...:.|.:.
Mouse    72 ISSISESNMDYTATIYLRQRWTDPRLVFEG---NKSFTL--DARLVEFLWVPDTYIVESKKSFLH 131

  Fly   179 GTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDN 243
            ..:..:.|..::.|||||.:.|:..|:.|.|:..|:|.|.|.||..||||.|:...|:..|...|
Mouse   132 EVTVGNRLIRLFSNGTVLYALRITTTVTCNMDLSKYPMDTQTCKLQLESWGYDGNDVEFSWLRGN 196

  Fly   244 -PVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLP 307
             .|...:.|:|.:|.:  ..|...:.||.:.       .|||:.:.....|.|.|.|::::.::|
Mouse   197 DSVRGLENLRLAQYTI--QQYFTLVTVSQQE-------TGNYTRLVLQFELRRNVLYFILETYVP 252

  Fly   308 SIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVS-YVTMSEVWFLVCTIFI 371
            |..:|.:||||||:..|..||||.:|.||:||..||.:....:|...: ::...:|:..:|..|:
Mouse   253 STFLVVLSWVSFWISLDSVPARTCIGVTTVLSMTTLMIGSRTSLPNTNCFIKAIDVYLGICFSFV 317

  Fly   372 FGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKT 436
            ||:|:|:|                           |.|.            |::..|:.    |.
Mouse   318 FGALLEYA---------------------------VAHY------------SSLQQMAV----KD 339

  Fly   437 CGPNNTVITIETPIIIGGSLS---REDSAISLDEQDET-----STSESSDSSK----EKPAQT-- 487
            .||......:....||..|:|   |:.|..|::...:.     .|.::||..|    ||.::.  
Mouse   340 RGPAKDSEEVNITNIINSSISSFKRKISFASIEISGDNVNYSDLTMKASDKFKFVFREKISRIID 404

  Fly   488 -FATMTPKEVSLWIDRKMRFVFPLSFIVFNALFW 520
             |....|..|    ||..:.:|||.|::.|..:|
Mouse   405 YFTIQNPSNV----DRYSKLLFPLIFMLANVFYW 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_651861.1 LIC 46..522 CDD:455710 130/489 (27%)
GabrpNP_666129.1 LIC 43..437 CDD:455710 126/472 (27%)
LGIC_ECD 60..241 CDD:475126 54/194 (28%)

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