DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pHCl-2 and lgc-58

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001368738.1 Gene:lgc-58 / 191637 WormBaseID:WBGene00001587 Length:553 Species:Caenorhabditis elegans


Alignment Length:574 Identity:138/574 - (24%)
Similarity:235/574 - (40%) Gaps:145/574 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 NCPSLKNAESMALMELLTRLTAPCR--YDRMVPPVVHNKDGEEVPMDIYARFYIYVMKNLDSSDL 122
            |.|.::.:.|..:...|..|....|  ||...|||.|:|  |||.: :....||..|.:..:..:
 Worm    14 NSPKVEASRSEPVPIYLDNLLNAGRQVYDNQSPPVQHDK--EEVTV-VELAMYIEGMSSFRTQTM 75

  Fly   123 QFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELT 187
            .|.:....|..:.|||||.:.   .||..:..::.|.|| |.|.::..|.:.:.....:..:.|.
 Worm    76 DFQLDVYFQQFWRDPRLAHNE---TRRVLVKDKAVLHKM-WKPDVYFANARIAEFHEVTQPNFLV 136

  Fly   188 SIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDNPVSFDKQLQ 252
            .|.|:|::|..||:...:.|.:|.:|:|.|.|:|...:.|:.|.|..:.:.|:.|.|::.:..:.
 Worm   137 WIQPDGSILYDTRISMVVVCTLNLEKWPLDSQRCHLRILSYAYTTEQLVIKWKEDEPITRNPNIA 201

  Fly   253 LTEYNLIGSLYNESIRVSNESYMSHGSLEGNY-----SIISFTVLLTREVGYYVIDYFLPSIMIV 312
            :::.::: .||             .|..:|||     |.::....:.||:.::|:..::|:.:||
 Worm   202 MSDMHIV-DLY-------------PGLCDGNYSTGTWSCVTAEFFVKREITHHVMQSYVPTTLIV 252

  Fly   313 TISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVE 377
            .|||.||||..:..|||.:|..||||:..|.:.:....|.:|||:...:||...|.:|:||.::|
 Worm   253 VISWFSFWLDVEAVPARVSLAITTLLTLSTQANAARMALPEVSYMKAIDVWMGACMMFVFGVMIE 317

  Fly   378 FAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKK--------------HRRHGYRRT------- 421
            |..||...|:.....   ||...||.::.:..:|.              |.||.:.|.       
 Worm   318 FTIVNYAQRQGRKWH---RTDAEIVMASSLESVKSGNAEKKPSRGDLGAHARHLFLRLRTNERQH 379

  Fly   422 ----------------DSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLD---E 467
                            |:.....|.:..|:...|     .::.|       ..||:....:   |
 Worm   380 LVEDPPEQIAMNDTAYDTVSQAYSNSFSDEEAAP-----VVQPP-------QNEDAEAQEEVWAE 432

  Fly   468 QDETSTSE---------------------------------------------SSDSSKEKP--- 484
            |.||:.||                                             .:|||::|.   
 Worm   433 QKETNLSEVWKESDPAERLAHWNEKENDASSPLMGNGRAHVRYGAAEKMKNRKCNDSSRKKEKWS 497

  Fly   485 ------------AQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFWTLVYCL 526
                        ...|..:..:..:..||:..|::|||:||:||..:|  :|.|
 Worm   498 SAIKQIQKHKRNGSVFGKIAGRNRAKKIDQTSRWIFPLTFIIFNLTYW--IYYL 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 136/568 (24%)
lgc-58NP_001368738.1 LIC 30..548 CDD:273305 133/555 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.