DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and lgc-57

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_496306.2 Gene:lgc-57 / 191636 WormBaseID:WBGene00001586 Length:473 Species:Caenorhabditis elegans


Alignment Length:456 Identity:108/456 - (23%)
Similarity:200/456 - (43%) Gaps:60/456 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 YDRMVPPVVHNKDGEEVPMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRR 149
            |:|...|::    .:::...:..:.||..|.:..:..:.|.|....|.:::|.||..:    |.:
 Worm    52 YNRNAYPLL----DQDLATHVDIQMYIEGMSSFHAQSMDFQVDIYFQEKWVDHRLQHN----NTK 108

  Fly   150 QPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKF 214
            :.::.:.:|..:||.|.::..|.:.::....:..:.|..|||||||....|:..|:.|..:..::
 Worm   109 RILVKDPKLFGLLWHPDLYFANARTASFHDVTQPNFLVWIYPNGTVWYDCRISLTVLCMQDLARY 173

  Fly   215 PFDEQKCKTTLESWMYNTTLVQLHWETDNPVSFDKQLQLTEYNLIG-SLYNESIRVSNESYMSHG 278
            |.|.|.|...:.|:.|:...:.:.|...|||..::.:::.:.:|.. ..|.:..:.:...:.|  
 Worm   174 PLDSQNCGLRILSYAYDEEQLIIRWNGGNPVEVNRGIRMPDMHLKHIKFYTKRDKYATGIWSS-- 236

  Fly   279 SLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITL 343
                  ::..|.|  .||:.:::|..::|:.:||.|||.||||..:..|.|.:|..||||:..|.
 Worm   237 ------AVAEFHV--DREITHHIIQSYIPTSLIVIISWFSFWLDVEAVPGRVSLSITTLLTLATQ 293

  Fly   344 SLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVP 408
            |.:....|.:.|.|...:||...|..|:|.:::||..||...||....::|.|.....|......
 Worm   294 SSAARMALPQASDVKAIDVWMGTCMAFVFSAMIEFTVVNYCVRRKVRTKIKPRGLSEQVHDMVAQ 358

  Fly   409 HLKKHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITI-------------ETPIIIGGSLSRED 460
            :.:|        .|...:.....|.:....||....|:             :..:.:..||....
 Worm   359 YREK--------KDKFNNGNCEISYEMALQPNEDNATVQRNFEKKEVREMNQASLFVRRSLLPTS 415

  Fly   461 SAISLDEQDETSTSESSDSSKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFWTLVYC 525
            ...::  :|..:..|.:..:.:|                |||..|.:|||:||:||..:|  :|.
 Worm   416 KRKTI--EDRINRVEENRKNAQK----------------IDRYSRALFPLAFIIFNIFYW--IYY 460

  Fly   526 L 526
            |
 Worm   461 L 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 106/450 (24%)
lgc-57NP_496306.2 Neur_chan_LBD 43..217 CDD:280998 39/172 (23%)
LIC 44..460 CDD:273305 106/453 (23%)
Neur_chan_memb 255..457 CDD:280999 58/227 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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