DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pHCl-2 and lgc-51

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001293359.1 Gene:lgc-51 / 184377 WormBaseID:WBGene00017399 Length:450 Species:Caenorhabditis elegans


Alignment Length:472 Identity:131/472 - (27%)
Similarity:221/472 - (46%) Gaps:59/472 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 STVNNC--PSLKNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIYVMKNLD 118
            |.|..|  |.|..|   |:::::.     ..|.|.:|   .|..|.:|.:.:.....:.|:.|..
 Worm    20 SFVEKCTKPRLTPA---AILDVIM-----ANYSRSLP---GNPVGVQVEVTVQDVMELSVLSNSF 73

  Fly   119 SSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAK 183
            ::|:.|:     .:.| |||||: |:|.|.||.:..:...:|::|.|::.:.|.:::.|..:...
 Worm    74 TADIWFS-----SIWY-DPRLAY-SHLDNCRQNLSFDDRFEKLIWSPNVCIVNTKSAHVHRSPKP 131

  Fly   184 DELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDNPVSFD 248
            :.|..:.||||:..:.|::....|.|:..:||.|.|.|:...||:.|||..|.::|.. |||:..
 Worm   132 NVLLMLLPNGTIWLNYRIRVQSPCSMDLARFPIDTQYCQLVFESYSYNTASVSVNWMA-NPVTVL 195

  Fly   249 KQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVT 313
            .::.|.:::|  |.|..|..  .|.|.:     |.:..::.....||:.|:|::..::|:.:.:.
 Worm   196 PEISLADFDL--SRYRTSRH--TEVYKA-----GEWYRLTVEFEFTRKYGFYILQLYVPTYISLF 251

  Fly   314 ISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMK----VSYVTMSEVWFLVCTIFIFGS 374
            |||::|.:.....|||..||..:|:| :|.   |..|:::    ||||...::|...|..|||.|
 Worm   252 ISWIAFCIDTKALPARIVLGVNSLMS-LTF---QFGNIIRSLPPVSYVKAIDLWMCTCVGFIFAS 312

  Fly   375 LVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKTCGP 439
            |:|.|||.   .::..|.||...:...: ||.|.:||.     :.......|......:|:....
 Worm   313 LLELAFVA---YQDKKLILKSGKSNAAI-STLVSYLKH-----FEPYHDVSSPPPPAPLDEKKSM 368

  Fly   440 NNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEKPAQTFATMTPKEVSLWIDRKM 504
            :.|..|       |.:.||.:    ||..| |...|...:...|.|.........:....:||..
 Worm   369 SRTTST-------GTNRSRSE----LDGLD-TKDLEEEIAEYRKLAYARKKWRLLDFGANVDRIS 421

  Fly   505 RFVFPLSFIVFNALFWT 521
            ..||||:|..||.::||
 Worm   422 FIVFPLTFAAFNVVYWT 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 131/472 (28%)
lgc-51NP_001293359.1 LIC 34..440 CDD:273305 125/455 (27%)
Neur_chan_LBD 35..235 CDD:280998 59/224 (26%)
Neur_chan_memb 242..437 CDD:280999 61/219 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.