DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pHCl-2 and lgc-39

DIOPT Version :10

Sequence 1:NP_651861.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_504821.3 Gene:lgc-39 / 184265 WormBaseID:WBGene00017314 Length:563 Species:Caenorhabditis elegans


Alignment Length:471 Identity:120/471 - (25%)
Similarity:210/471 - (44%) Gaps:74/471 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 DRMVPPVVHN---KDGEEVPM----------DIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDP 137
            ||:: .|:.|   :||..:.|          |::...||..|.:..:..:.|.|...|.:.:.|.
 Worm   119 DRLL-KVIGNGVVEDGYNMFMAPGQSQGKRTDVHVAVYIESMSSFKAQSMDFEVDMYLAMGWFDR 182

  Fly   138 RLAFSSYLPNRRQPIMGESEL-KKMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRL 201
            |||.     |...||:..|:| ...:|.|.::..|.:.:.:...:..:.:..:||:|.:..:.||
 Worm   183 RLAH-----NCTHPILVTSKLIADRIWYPDLYFVNSKYAYLQEVTTPNLMVIVYPDGLIFKTMRL 242

  Fly   202 QATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDN---PVSFDKQLQLTEYNLIGSLY 263
            ..||.|.|:.:.||.|.|:|..|::|:.|...:|.|.|..|.   |:.|:..::|.:..:....:
 Worm   243 DVTLSCMMDLKLFPLDYQECPLTIQSFAYIEQIVNLTWRDDPPNFPIGFNPDIKLNDMQITNKRF 307

  Fly   264 NESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPA 328
               ::.:....|..|  |..:|.|...:::.|.|.:::|..::|:.|:|:|||:||||....:||
 Worm   308 ---VKCAGPYPMFRG--EAAWSCIQGYIVMKRLVLFHIIQTYIPTGMLVSISWMSFWLDPRASPA 367

  Fly   329 RTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVEFAFVNTIWRRNNDLQL 393
            |.:|..|:||:..|:|.....:|.:|||:...::|.......||..|:|::||:        ..:
 Worm   368 RISLTITSLLTLTTMSNGARQDLPQVSYIKALDIWLTFSQALIFLVLLEYSFVS--------YYM 424

  Fly   394 KKRTTKYIVKSTF----VPHLKKHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPIIIGG 454
            .||||....::.|    |...|:..:          :..|..:.:|....|||.         |.
 Worm   425 TKRTTDCSHRNMFYEERVQECKREEK----------ARKSIVNNNKPVIANNTE---------GS 470

  Fly   455 SLSR--EDSAISLDEQDETSTSESSDSSKEKPAQT-----FATMTP--------KEVSLWIDRKM 504
            .|:|  :....||........:|||......|..:     |.|..|        :.::..||...
 Worm   471 DLNRNKKSQQFSLTHGISACLNESSALMSVTPVPSRLFTKFDTNKPCARCSEKNERIAFKIDEYS 535

  Fly   505 RFVFPLSFIVFNALFW 520
            |::||..|.:|...:|
 Worm   536 RWLFPTVFSLFCVSYW 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_651861.1 LIC 46..522 CDD:455710 120/471 (25%)
lgc-39NP_504821.3 LIC 119..554 CDD:455710 120/471 (25%)

Return to query results.
Submit another query.