DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pHCl-2 and acc-1

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001293865.1 Gene:acc-1 / 177799 WormBaseID:WBGene00010275 Length:470 Species:Caenorhabditis elegans


Alignment Length:495 Identity:122/495 - (24%)
Similarity:210/495 - (42%) Gaps:89/495 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 LSQSTVNNCPSLKNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIYVMKNL 117
            ||||:.....||.|..:..  |::..|.........:|.  |       |..:....::..:.::
 Worm    20 LSQSSKGIAQSLDNCANDT--EIINALLKDSYNKHYIPS--H-------PTHVRVDMWVQEVTSV 73

  Fly   118 DSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSA 182
            ......|.:...:...:.||.|.:....|.:|. |..:.::.:.||:|:....|.:::.:..:..
 Worm    74 SELTQDFEIDLYINEFWEDPALVYEDMNPCKRN-ISFDDKVLQRLWLPNTCFINSKSAAIHESPF 137

  Fly   183 KDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDNPVSF 247
            |:....::.|||:.|:.|::.|..|.|..::||||:|||..|.||:.|||..|::.|....||..
 Worm   138 KNVFLMVFSNGTLWTNYRMKLTGPCDMKLKRFPFDKQKCYLTFESFNYNTGEVRMQWNQPYPVIL 202

  Fly   248 DKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIV 312
            .|:::|.::.|:    |.|:....:.|.:     |.:..::...:..|..|:||:..::|:::.:
 Worm   203 LKRIELPDFKLV----NFSVIAVEQMYPA-----GWWDELTVAFVFERRYGWYVLQGYIPTMVTI 258

  Fly   313 TISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVE 377
            .|||:||:|.....||||.||..:||:......:...||.:||||...:||.|...:|||.||:|
 Worm   259 VISWISFYLGPRAIPARTMLGVNSLLAMTFQFGNIIRNLPRVSYVKAIDVWMLSGMLFIFLSLLE 323

  Fly   378 FAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTS--------MD 434
            .|.|. ...||..|.               |.:||.:|........:..:|.|:.        :|
 Worm   324 LAVVG-FMSRNEGLP---------------PKVKKRKRQEDDDEGFSWKSMQTSPHLELRQFWVD 372

  Fly   435 KTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEKPAQTFATMTPKEVSLW 499
            |..                .|| |.|||:       ....:.:....|:|.|.....  :|...|
 Worm   373 KRV----------------NSL-RNDSAV-------PPVEDYAPMELEQPYQNITKR--REKRKW 411

  Fly   500 ID------RKMR------------FVFPLSFIVFNALFWT 521
            :.      |.||            ..||.::::||..:|:
 Worm   412 MSGLRKKWRAMRELRPETVDFYSAIFFPTAYMLFNISYWS 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 122/495 (25%)
acc-1NP_001293865.1 Neur_chan_LBD 38..243 CDD:280998 50/225 (22%)
LIC 39..453 CDD:273305 115/474 (24%)
Neur_chan_memb 251..450 CDD:280999 61/240 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.