DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and glc-2

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_491470.1 Gene:glc-2 / 172103 WormBaseID:WBGene00001592 Length:434 Species:Caenorhabditis elegans


Alignment Length:494 Identity:132/494 - (26%)
Similarity:213/494 - (43%) Gaps:81/494 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LNTTDAFSVSINLSQSTVNNCPSLKNAE-SM-ALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPM 103
            :.|..:||:.:.|..     .|.:.|.| || :..|:|..|..  .||..|.|...|...|.. :
 Worm     1 MTTPSSFSILLLLLL-----MPVVTNGEYSMQSEQEILNALLK--NYDMRVRPPPANSSTEGA-V 57

  Fly   104 DIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSS---YLPNRRQPIMGESELKKMLWVP 165
            ::.....|.::..:|..::::::|...:.:::|||||:.:   |.|   ...:....:||.||:|
 Worm    58 NVRVNIMIRMLSKIDVVNMEYSIQLTFREQWIDPRLAYENLGFYNP---PAFLTVPHVKKSLWIP 119

  Fly   166 HIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMY 230
            ..|...|:|:.......::....|||:|.:|.|:|:..|..|.|..|.:|.|.|.|...|.|:.:
 Worm   120 DTFFPTEKAAHRHLIDMENMFLRIYPDGKILYSSRISLTSSCPMRLQLYPLDYQSCNFDLVSYAH 184

  Fly   231 NTTLVQLHWETDNPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTR 295
            ....:...|:...||.....:.....|.|...|     .:|....||.: .|:|..:...:|..|
 Worm   185 TMNDIMYEWDPSTPVQLKPGVGSDLPNFILKNY-----TTNADCTSHTN-TGSYGCLRMQLLFKR 243

  Fly   296 EVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMS 360
            :..||::..:.|:.|||.:||||||:....|..|..||.||||:..|:..:....|..||||.:.
 Worm   244 QFSYYLVQLYAPTTMIVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVV 308

  Fly   361 EVWFLVCTIFIFGSLVEFAFV---NTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTD 422
            :||...|..|:||:|:|:|||   :::  |.||...:|...|           .:.||......|
 Worm   309 DVWLGACQTFVFGALLEYAFVSYQDSV--RQNDRSREKAARK-----------AQRRREKLEMVD 360

  Fly   423 STMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEKPAQT 487
            :.:.....     ||                                  .|.|:.::.::|..:.
 Worm   361 AEVYQPPC-----TC----------------------------------HTFEARETFRDKVRRY 386

  Fly   488 FATMTPKEVSLWIDRKMRFVFPLSFIVFNALFWTLVYCL 526
            |.  .|..:...||...|||.||:|:.||.::|  |.||
 Worm   387 FT--KPDYLPAKIDFYARFVVPLAFLAFNVIYW--VSCL 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 128/483 (27%)
glc-2NP_491470.1 LIC 29..419 CDD:273305 120/457 (26%)
Neur_chan_LBD 29..244 CDD:280998 56/226 (25%)
Neur_chan_memb 252..417 CDD:280999 60/218 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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