DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Htr3a

DIOPT Version :10

Sequence 1:NP_651861.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_038589.2 Gene:Htr3a / 15561 MGIID:96282 Length:489 Species:Mus musculus


Alignment Length:333 Identity:86/333 - (25%)
Similarity:137/333 - (41%) Gaps:40/333 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 ALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYL 135
            ||:.|...|.|  .|.:.|.||...:....|.:|:    .:|.:.|:|..:...|.....:..:.
Mouse    38 ALLRLSDHLLA--NYKKGVRPVRDWRKPTTVSIDV----IMYAILNVDEKNQVLTTYIWYRQYWT 96

  Fly   136 DPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTR 200
            |   .|..:.|.....:...|.....:|||.| |.||...  :|.|.......::..|.|.....
Mouse    97 D---EFLQWTPEDFDNVTKLSIPTDSIWVPDI-LINEFVD--VGKSPNIPYVYVHHRGEVQNYKP 155

  Fly   201 LQATLYCWMNFQKFPFDEQKCKTTLESWMY-----NTTLVQLHWETDNPVSFDKQLQLT--EYNL 258
            ||....|.::...||||.|.|..|..||::     |.||    |.:...|..||.:.:.  |:.|
Mouse   156 LQLVTACSLDIYNFPFDVQNCSLTFTSWLHTIQDINITL----WRSPEEVRSDKSIFINQGEWEL 216

  Fly   259 IGSL--YNE-SIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFW 320
            :...  :.| ||.:||           :|:.:.|.|::.|...:|.:...||||.::.:..|.|.
Mouse   217 LEVFPQFKEFSIDISN-----------SYAEMKFYVIIRRRPLFYAVSLLLPSIFLMVVDIVGFC 270

  Fly   321 LQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVT-MSEVWFLVCTIFIFGSLVEFAFVNTI 384
            |..| :..|.:...|.||.:....:...:.|...:..| :..|:|:||...:..||.|..|:..:
Mouse   271 LPPD-SGERVSFKITLLLGYSVFLIIVSDTLPATAIGTPLIGVYFVVCMALLVISLAETIFIVRL 334

  Fly   385 WRRNNDLQ 392
            ..: .|||
Mouse   335 VHK-QDLQ 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_651861.1 LIC 46..522 CDD:455710 86/333 (26%)
Htr3aNP_038589.2 LIC 5..483 CDD:273305 86/333 (26%)
HA-stretch, determines single-channel conductance in 5-HT3 receptors. /evidence=ECO:0000250|UniProtKB:P46098 425..461
Blue background indicates that the domain is not in the aligned region.

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