DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pHCl-2 and Glrb

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_036018791.1 Gene:Glrb / 14658 MGIID:95751 Length:530 Species:Mus musculus


Alignment Length:515 Identity:130/515 - (25%)
Similarity:231/515 - (44%) Gaps:57/515 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 TTDAFSVSINLSQSTVNNCP-SLKNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIY 106
            |:|:..:.:.....:....| .|......:...:|.||..  .||..:.|   |..|  :|:|:.
Mouse    36 TSDSELLGLQACHHSCQQSPEDLARVPPNSTSNILNRLLV--SYDPRIRP---NFKG--IPVDVV 93

  Fly   107 ARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTN 171
            ...:|....::..:.:.:.|...|:.::.||||...|.. .....:..:..:.|.||.|.:|..|
Mouse    94 VNIFINSFGSIQETTMDYRVNIFLRQKWNDPRLKLPSDF-RGSDALTVDPTMYKCLWKPDLFFAN 157

  Fly   172 EQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQ 236
            |:::.....:.::.|..|:.:|.||.|.||..||.|.::...||.|.|:||..|||:.|.|..::
Mouse   158 EKSANFHDVTQENILLFIFRDGDVLVSMRLSITLSCPLDLTLFPMDTQRCKMQLESFGYTTDDLR 222

  Fly   237 LHWETDNPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYV 301
            ..|::.:||..:| :.|.:::    :..|.|...|.:....|:  |.|:.:.....|.|:||:|:
Mouse   223 FIWQSGDPVQLEK-IALPQFD----IKKEDIEYGNCTKYYKGT--GYYTCVEVIFTLRRQVGFYM 280

  Fly   302 IDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLV 366
            :..:.|:::||.:||:|||:..|.:.||..||..::||..:...:....|.|||||...:||.:.
Mouse   281 MGVYAPTLLIVVLSWLSFWINPDASAARVPLGIFSVLSLASECTTLAAELPKVSYVKALDVWLIA 345

  Fly   367 CTIFIFGSLVEFAFVNTIWRRNNDLQLKK---------------RTTKYIVKSTFVP-HLK---- 411
            |.:|.|.||||:|.|..:......::.:|               ...|..|..|..| |:.    
Mouse   346 CLLFGFASLVEYAVVQVMLNNPKRVEAEKARIAKAEQADGKGGNAAKKNTVNGTGTPVHISTLQE 410

  Fly   412 --------KHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLD-- 466
                    .::..|: .||:..:.:..|...|.|...:.:.:.:..|:  |||.|:....:.|  
Mouse   411 LPMVCQQITYQLDGW-PTDTLTTQVGETRCKKVCTSKSDLRSNDFSIV--GSLPRDFELSNYDCY 472

  Fly   467 ----EQDETSTSESSDSSKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFWTL 522
                |.:.......:.:.|..||:.......|.:.|:    .|.:||..|:.||.::|::
Mouse   473 GKPIEVNNGLGKPQAKNKKPPPAKPVIPTAAKRIDLY----ARALFPFCFLFFNVIYWSI 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 128/510 (25%)
GlrbXP_036018791.1 LIC 64..529 CDD:273305 126/487 (26%)
LGIC_ECD_GlyR_beta 89..275 CDD:349811 51/193 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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