DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Gabrr2

DIOPT Version :10

Sequence 1:NP_651861.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001407795.1 Gene:Gabrr2 / 14409 MGIID:95626 Length:499 Species:Mus musculus


Alignment Length:77 Identity:17/77 - (22%)
Similarity:30/77 - (38%) Gaps:23/77 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DTIRTVGGELVEQVKLTDEFENKKKEKKSQTYRIVYRSHERAL----------------TKEEVN 55
            |.:..:.|.:.|.:.|.|  ..|..|:.....::|.:..|||.                .:::::
Mouse   311 DVVLKINGTVTENLSLID--AKKLIERSKGKLKMVVQRDERATLLNIPDMDDSIPSANSDRDDIS 373

  Fly    56 VIHKQIEQSLAS 67
            .||     ||||
Mouse   374 EIH-----SLAS 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_651861.1 LIC 46..522 CDD:455710 9/38 (24%)
Gabrr2NP_001407795.1 LIC 74..498 CDD:455710 17/77 (22%)
LGIC_ECD_GABAAR_rho 101..286 CDD:349806
Cys-loop 203..217 CDD:349806
Blue background indicates that the domain is not in the aligned region.

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