DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Gabre

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_059065.2 Gene:Gabre / 14404 MGIID:1330235 Length:916 Species:Mus musculus


Alignment Length:491 Identity:93/491 - (18%)
Similarity:200/491 - (40%) Gaps:85/491 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 LTAPC----------RYDRMVPPVVHNKDGE------EVPMDIYARFYIYVMKNLDSSDLQFTVQ 127
            ||..|          |..|::..::.|.|.:      |.|..:.....:..:..:.:.|:::::.
Mouse   466 LTVDCMTERPGGKLTRASRILNTILSNYDHKLRPGIGEKPTVVTVEVIVNSLGPISTPDMEYSID 530

  Fly   128 GLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSIYPN 192
            .:....:.|.||.::...    :.::....:...||:|..|..|.:.:.....:..:::..|:.:
Mouse   531 IIFHQTWYDERLRYNDTF----ETLILHGNVVSQLWIPDTFFRNSKRTQEYDITIPNQMALIHKD 591

  Fly   193 GTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDN-PVSFDKQLQLTEY 256
            |.||.|.|:.....|.::...||.|...|..:..|:.|:.:.:...||... .::.....:|.|:
Mouse   592 GKVLYSVRMTIDARCSLHMLNFPMDSHSCPLSFSSFSYDDSEMIYKWENFKLEINAKNTWKLLEF 656

  Fly   257 NLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWL 321
            :..|  .|....:.:..:       |::.:::|...::|..|:.|...::||.:...:||||||:
Mouse   657 DFTG--VNNKTEIISTPF-------GDFMVMTFFFNVSRRFGFIVFQNYVPSSVTTMLSWVSFWI 712

  Fly   322 QADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVEFAFVNTIWR 386
            :.:...||.::|.:::|:..||......|..:|||:|..:.:..:|.:..|.:|:|||.:|.:..
Mouse   713 KIEAAAARASVGVSSVLTMATLGTLSCKNFPRVSYLTALDFYIAICFVLCFCTLLEFAVLNFLTY 777

  Fly   387 RNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPII 451
            .|    :|::.:..:                |:...::.:...|.:..:|..........:..:.
Mouse   778 NN----IKRQASLKV----------------YQLPTNSRANARTRARARTRARARARARQQQEVF 822

  Fly   452 IGGSLSREDSAISLDEQDETSTSESSDSSKE--------------KPAQTFATMTPK-EVSLW-- 499
            :...::.|::|       |.....|..|.:.              :..:.:..|.|. |...|  
Mouse   823 VCEIVTYEENA-------EEGYQWSPRSRRPQCPWRRCGRSYVCFRVLRKYFCMAPGCEGGSWQR 880

  Fly   500 ---------IDRKMRFVFPLSFIVFNALFWTLVYCL 526
                     :|...|.:||::|..||.|:|.:  ||
Mouse   881 GRICIHVYRLDNYSRVLFPITFFFFNVLYWLI--CL 914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 91/485 (19%)
GabreNP_059065.2 Neur_chan_LBD 482..687 CDD:280998 35/217 (16%)
LIC 484..912 CDD:273305 87/467 (19%)
Neur_chan_memb 696..910 CDD:280999 48/240 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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