DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Gabra4

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001345970.1 Gene:Gabra4 / 14397 MGIID:95616 Length:578 Species:Mus musculus


Alignment Length:530 Identity:133/530 - (25%)
Similarity:222/530 - (41%) Gaps:124/530 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 LLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRL 139
            |..||.:.|.:..::.||.      ||..|||...:    ..:...::::|:....:..::|.||
Mouse    80 LSVRLWSACLFVEILGPVT------EVKTDIYVTSF----GPVSDVEMEYTMDVFFRQTWIDKRL 134

  Fly   140 AFSSYLPNRRQPIMGESELKKM-------LWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLT 197
            .:.           |..|:.::       :|.|..|..|.:.|.....:|.::|..|..|||:|.
Mouse   135 KYD-----------GPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILY 188

  Fly   198 STRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETDNP---VSFDKQ-LQLTEYNL 258
            :.||..:..|.|....||.|...|.....|:.|..:.:...| |..|   |...|: ..|.:|:|
Mouse   189 TMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTW-TKGPEKSVEVPKESSSLVQYDL 252

  Fly   259 IGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQA 323
            ||.      .||:|:..   |:.|.|.:::....|.|::||::|..::|.||.|.:|.||||:..
Mouse   253 IGQ------TVSSETIK---SITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINK 308

  Fly   324 DQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFL-VCTIFIFGSLVEFAFVNTIWRR 387
            :..||||..|.||:|:..|||:|..::|.||||.|..: ||: ||..|:|.:|:|||.||  :..
Mouse   309 ESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMD-WFIAVCFAFVFSALIEFAAVN--YFT 370

  Fly   388 NNDLQ-LKKRTTKYIVKSTFVPHLK-KHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPI 450
            |..:| .||:.:|...:....|.|| ||.....:.|.:.::....|         |.::..|:.:
Mouse   371 NIQMQKAKKKISKPPPEVPAAPVLKEKHTETSLQNTHANLNMRKRT---------NALVHSESDV 426

  Fly   451 IIGGSLSREDSAISLDEQDETSTSESSDSSKEKP------AQTFA----------------TMTP 493
            .....:....|..|..::...:|.::..:|...|      |:|.:                |:.|
Mouse   427 KSRTEVGNHSSKTSAVQESSEATPKAHLASSPNPFSRANAAETMSAAARGLSSAASPSPHGTLRP 491

  Fly   494 KEV--------------------------------------------SLWIDRKMRFVFPLSFIV 514
            ..:                                            :..||:..|.:||::|..
Mouse   492 ASLGSASTRPAFGSRLGRIKTTVNTTGAAGNVSATPPPPAPPPSGSGTSKIDKYARILFPVTFGA 556

  Fly   515 FNALFWTLVY 524
            ||.::| :||
Mouse   557 FNMVYW-VVY 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 131/526 (25%)
Gabra4NP_001345970.1 Neur_chan_LBD 13..565 CDD:332142 131/528 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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