DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and Glra3

DIOPT Version :10

Sequence 1:NP_651861.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_063131053.1 Gene:Glra3 / 114516 RGDID:621229 Length:465 Species:Rattus norvegicus


Alignment Length:489 Identity:133/489 - (27%)
Similarity:219/489 - (44%) Gaps:81/489 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 VVSPLNTTDAFSVSINLSQSTVNNCPSLKNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEV 101
            :|:...|..|.|.|..:|.|..             |.:|:.|.:.   ||..:.|   |..|.  
  Rat    41 LVATKETNSARSRSAPMSPSDF-------------LDKLMGRTSG---YDARIRP---NFKGP-- 84

  Fly   102 PMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRR---QPIMGESELKKMLW 163
            |:::....:|....::..:.:.:.|...|:.::.|||||:|.| |:..   .|.|.:|     :|
  Rat    85 PVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEY-PDDSLDLDPSMLDS-----IW 143

  Fly   164 VPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESW 228
            .|.:|..||:.:.....:..::|..|:.||.||.|.||..||.|.|:.:.||.|.|.|...|||:
  Rat   144 KPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESF 208

  Fly   229 MYNTTLVQLHWETDNPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLL 293
            .|....:...|:.:.||...:.|.|.::.|   ...:.:|...:.|.:     |.::.|.....|
  Rat   209 GYTMNDLIFEWQDEAPVQVAEGLTLPQFLL---KEEKDLRYCTKHYNT-----GKFTCIEVRFHL 265

  Fly   294 TREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVT 358
            .|::|||:|..::||::||.:||||||:..|..|||..||.||:|:..|.|.....:|.|||||.
  Rat   266 ERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVK 330

  Fly   359 MSEVWFLVCTIFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDS 423
            ..::|..||.:|:|.:|:|:|.||.:.|::.:|                  |:..|:...:..:.
  Rat   331 AIDIWMAVCLLFVFSALLEYAAVNFVSRQHKEL------------------LRFRRKRKNKDDEV 377

  Fly   424 TMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEKPAQTF 488
            ..|..|.|:..                 :|..|..:|..:   .:......:....|.::..:.|
  Rat   378 RESRFSFTAYG-----------------MGPCLQAKDGVV---PKGPNHAVQVMPKSADEMRKVF 422

  Fly   489 ATMTPKEVSLWIDRKMRFVFPLSFIVFNALFWTL 522
            .....|     ||...|..|||:|::||..:|.:
  Rat   423 IDRAKK-----IDTISRACFPLAFLIFNIFYWVI 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_651861.1 LIC 46..522 CDD:455710 131/478 (27%)
Glra3XP_063131053.1 None

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