DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pHCl-2 and Gabra5

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001349090.1 Gene:Gabra5 / 110886 MGIID:95617 Length:463 Species:Mus musculus


Alignment Length:444 Identity:131/444 - (29%)
Similarity:206/444 - (46%) Gaps:65/444 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 YDRMVPPVVHNKDGE---EVPMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLP 146
            ||..:.|.:    ||   :|..|||...:    ..:..:::::|:....:..:.|.||.|..  |
Mouse    60 YDNRLRPGL----GERITQVRTDIYVTSF----GPVSDTEMEYTIDVFFRQSWKDERLRFKG--P 114

  Fly   147 NRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNF 211
            .:|.|:  .:.|...:|.|..|..|.:.|.....:..::|..:..:||:|.:.||..:..|.|..
Mouse   115 MQRLPL--NNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQL 177

  Fly   212 QKFPFDEQKCKTTLESWMYNTTLVQLHW---ETDNPVSFDKQLQLTEYNLIG-SLYNESIRVSNE 272
            :.||.|...|.....|:.|..:.|...|   .|.:.|..:...:|.:|:|:| ::..|:|..|. 
Mouse   178 EDFPMDAHACPLKFGSYAYPNSEVVYVWTNGSTKSVVVAEDGSRLNQYHLMGQTVGTENISTST- 241

  Fly   273 SYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTL 337
                     |.|:|::....|.|::||:||..:||.||.|.:|.|||||..:..||||..|.||:
Mouse   242 ---------GEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTV 297

  Fly   338 LSFITLSLSQENNLMKVSYVTMSEVWFL-VCTIFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYI 401
            |:..|||:|..|:|.||:|.|..: ||: ||..|:|.:|:|||.||...:|......||......
Mouse   298 LTMTTLSISARNSLPKVAYATAMD-WFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAK 361

  Fly   402 VKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLD 466
            :|       ||.|.....:     ||.:.|:...|..||   |..|.|  ..|:.:....:|...
Mouse   362 IK-------KKERELILNK-----STNAFTTGKLTHPPN---IPKEQP--PAGTANAPTVSIKAS 409

  Fly   467 EQDETSTSESSDSSKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFW 520
            | ::|:.|:.:.:|..|                ||:..|.|||:.|..||.::|
Mouse   410 E-EKTAESKKTYNSISK----------------IDKMSRIVFPILFGTFNLVYW 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 131/444 (30%)
Gabra5NP_001349090.1 LIC 15..449 CDD:273305 131/444 (30%)
LGIC_ECD_GABAAR_A5 58..256 CDD:349839 52/217 (24%)
Cys-loop 173..187 CDD:349839 5/13 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..408 7/25 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.