DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and gabrp

DIOPT Version :9

Sequence 1:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_017948119.2 Gene:gabrp / 100498164 XenbaseID:XB-GENE-1012959 Length:401 Species:Xenopus tropicalis


Alignment Length:448 Identity:111/448 - (24%)
Similarity:200/448 - (44%) Gaps:76/448 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 YDRMVPPVVHNKDGEEVPMDIYARFYIYVMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRR 149
            |::.:.|..:.|     |::|.....:..:..:...::.:|....|:.|:.|.||.|..   || 
 Frog    14 YNKYLRPKFNEK-----PIEIAVSLEVASIDAVSEENMDYTATINLRQRWTDERLVFEG---NR- 69

  Fly   150 QPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKF 214
             .|..::.|.:.||||..::.:.:.|.:...:.::.|..::.|||||.:.|:..|:.|.|:..|:
 Frog    70 -SITLDARLVESLWVPDTYIVDSKKSFLHDVTVENRLVRLFANGTVLYAIRITTTVACKMDLTKY 133

  Fly   215 PFDEQKCKTTLESWMYNTTLVQLHW-ETDNPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHG 278
            |.|.|.||..||||.|:...:...| ..::.|.....|||.:|.:             |.|.:..
 Frog   134 PMDRQTCKLQLESWGYSEKDLTYVWMRANDSVRGMDHLQLAQYTV-------------EQYYTTN 185

  Fly   279 SL----EGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLS 339
            |:    .|||..::...:|.|.|.|::::.::||.::|.:||||||:.....||||..|.||:|:
 Frog   186 SIGKDETGNYPRLALCFILRRNVVYFILETYIPSALLVVLSWVSFWISMSSVPARTCFGVTTVLA 250

  Fly   340 FITLSLSQENNLMKVSYVTMS-EVWFLVCTIFIFGSLVEFAFVNTIWRRNNDLQLKK-----RTT 398
            ..|:.:....|....:.:..: :|:..:|..|:||:|:|:||.:.....|:.:..:|     ...
 Frog   251 MTTIMMGSRFNFPTANCIIKAIDVYLGICFSFVFGALLEYAFAHYCSELNSAVNKEKIKNSLEEP 315

  Fly   399 KYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAI 463
            ::.:.|..:....|.......:|::        :.:|....|:.:..:...|.|          |
 Frog   316 EHDISSVLIACDSKQLNRKENQTEN--------APEKNSLKNSVIFKLWLKIKI----------I 362

  Fly   464 SLDEQDETSTSESSDSSKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFWT 521
            .|                    :.|....|:.|    ||..|.||||.|::.|.::||
 Frog   363 RL--------------------KKFNVTNPENV----DRYSRTVFPLIFLIINIIYWT 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 111/448 (25%)
gabrpXP_017948119.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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