DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-2 and gabrb1

DIOPT Version :10

Sequence 1:NP_651861.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_012811146.2 Gene:gabrb1 / 100489344 XenbaseID:XB-GENE-6049110 Length:477 Species:Xenopus tropicalis


Alignment Length:431 Identity:112/431 - (25%)
Similarity:199/431 - (46%) Gaps:68/431 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 DLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDE 185
            ::.:|:....|..:.|.||::|....|    :..::.:...||||..:..|::.|.|.|.:.|:.
 Frog    79 NMDYTLTMYFQQSWRDKRLSYSGIPLN----LTLDNRVADQLWVPDTYFLNDKRSFVHGVTVKNR 139

  Fly   186 LTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWE-TDNPVSFDK 249
            :..::|:||||...|:..|..|.|:.:::|.|||.|...:||:.|.|..::.:|. .|..::..:
 Frog   140 MIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIKFYWNGGDKAITGVE 204

  Fly   250 QLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVTI 314
            :::|.::::|     :...||.....|.|:    |..:|.:..|.|.:||:::..::||.:|..:
 Frog   205 KIELPQFSII-----DYKMVSRNVIFSTGA----YPRLSLSFRLKRNIGYFILQTYMPSTLITIL 260

  Fly   315 SWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVEFA 379
            ||||||:..|.:.||..||.||:|:..|:|......|.|:.||...:::.:.|.:|:|.:|:|:|
 Frog   261 SWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYA 325

  Fly   380 FVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDSTMSTMSTTSMDKTCGPNNTVI 444
            |||.|:..... ||:|:..:...|:               ..:.|...|:...:|  ...|..:.
 Frog   326 FVNYIFFGKGP-QLQKKAAEKAEKA---------------NNEKTKLEMNKVQVD--AHGNILLT 372

  Fly   445 TIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSK---EKP---------------------- 484
            |:|....:.|      |.:.....|..:|..|.||:.   .||                      
 Frog   373 TLELRNEVSG------SEVLTSISDPRATMFSYDSASIQYRKPVANRDMYSRSTLDRHVVHKKGR 431

  Fly   485 ----AQTFATMTPKEVSL-WIDRKMRFVFPLSFIVFNALFW 520
                |.......|....: .|||..|.:||::|..||.::|
 Frog   432 LRRRASQIKIKIPDLTDVNGIDRWSRMIFPVAFAFFNVVYW 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-2NP_651861.1 LIC 46..522 CDD:455710 112/431 (26%)
gabrb1XP_012811146.2 LIC 9..475 CDD:273305 112/431 (26%)

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