DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsynC and VMA3

DIOPT Version :9

Sequence 1:NP_001247382.1 Gene:ATPsynC / 43693 FlyBaseID:FBgn0039830 Length:138 Species:Drosophila melanogaster
Sequence 2:NP_010887.3 Gene:VMA3 / 856686 SGDID:S000000753 Length:160 Species:Saccharomyces cerevisiae


Alignment Length:65 Identity:25/65 - (38%)
Similarity:37/65 - (56%) Gaps:7/65 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 IGAGAATVGVAGSGAGIGTVFGSLIIGYA--RNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLL 134
            :||| .:||::|..||    |...|:|.|  |..|.:.:||...||....:|.:||:.|::|.||
Yeast    91 LGAG-LSVGLSGLAAG----FAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLL 150

  Fly   135  134
            Yeast   151  150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsynCNP_001247382.1 ATP9 62..138 CDD:164765 25/65 (38%)
VMA3NP_010887.3 V_ATP_synt_C 11..116 CDD:130170 12/29 (41%)
ATP-synt_Vo_c_ATP6C_rpt2 84..151 CDD:349416 25/65 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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