DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and RLP53

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_001332753.1 Gene:RLP53 / 832764 AraportID:AT5G27060 Length:958 Species:Arabidopsis thaliana


Alignment Length:982 Identity:233/982 - (23%)
Similarity:385/982 - (39%) Gaps:246/982 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 LDLSGNNLTKLHHKLFNNFDV-----LRVISMRDNKIKIQKPTETFNAVHYTLLKLDLSGDRNDP 414
            ||||   .:.||.:..:|..:     |..:.:..|..|.|..:...|..|.|.  ||||.:.   
plant   101 LDLS---CSSLHGRFHSNSSIRNLHFLTTLDLSFNDFKGQITSSIENLSHLTY--LDLSSNH--- 157

  Fly   415 TNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGI--QSHAFKHVRGLKR 477
            .:.|.|..:.|:..|:.                 :.|.|.|.:..:.|.|  .||       |..
plant   158 FSGQILNSIGNLSRLTY-----------------LNLFDNQFSGQAPSSICNLSH-------LTF 198

  Fly   478 LDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTS 542
            ||.|.|........:...:.|.......|:.:||. :|:. :.:|::|..||.|||:.|....:.
plant   199 LDLSYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQ-IPSS-IGNLSNLTTLDLSNNNFSGQIPSF 261

  Fly   543 FHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDN 607
            ...|..|..|.|..|        .|.|:|.|                  :|.:|..|.:|::|||
plant   262 IGNLSQLTFLGLFSN--------NFVGEIPS------------------SFGNLNQLTRLYVDDN 300

  Fly   608 KIDKIERRAFMNLDELEYLSLRGNKIN-----NLADESFQNLPKLEILDMAF-NQLPNFNFDYFD 666
            |:........:||..|..|||..||..     |:.  |..||...:..|.|| ...|:|.|    
plant   301 KLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNIT--SLSNLMDFDASDNAFTGTFPSFLF---- 359

  Fly   667 QVGTLSNLN-VNVSHNQIRQLMYNSSWSGRNEHGGMYH-SNIKILDLSHNN-------------- 715
               |:.:|. :.::.||::         |..|.|.:.. ||:..||:.:||              
plant   360 ---TIPSLTYIRLNGNQLK---------GTLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLVK 412

  Fly   716 ---ISIIHPGYFRPAEISL-THLH--LGYN-SLMNTTRDVFGN-----MPHLQWLDLSYNWIHEL 768
               :.|.|.....|.:.|: :||.  |..| |.:|||..:..|     ...|..||||.|.:...
plant   413 LFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSAT 477

  Fly   769 DFDAFKN--TKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRG-LPDNLFYNGGMEKLD 830
            :..:..:  ::.:|.::.....:::.|:.: :....|..:|.|:|.::| :||.|:....:..::
plant   478 NKSSVSDPPSQLIQSLYLSGCGITEFPEFV-RTQHELGFLDISNNKIKGQVPDWLWRLPILYYVN 541

  Fly   831 VSHNMML--KIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDA 893
            :|:|.::  :.||....||..|    |..:||||..|.|....  .|||..||:|       |:.
plant   542 LSNNTLIGFQRPSKPEPSLLYL----LGSNNNFIGKIPSFICG--LRSLNTLDLS-------DNN 593

  Fly   894 VFATMPKLAVLDLSHNRDLKVMDKSFMG-LENSLIKLGLENISLS-TVPEIRLKYLREFRLGYNE 956
            ...::|:.                  || |:::|..|.|....|| .:|:...:.||...:|:|:
plant   594 FNGSIPRC------------------MGHLKSTLSVLNLRQNHLSGGLPKQIFEILRSLDVGHNQ 640

  Fly   957 L-PSIPQELAHNMSNLRMLDLSNNDLTNV-PLMTQALPHLRRLMLSGNPITSLNNNSFDG-VNE- 1017
            | ..:|:.|:. .|.|.:|::.:|.:.:. |....:||.|:.|:        |.:|:|.| ::| 
plant   641 LVGKLPRSLSF-FSTLEVLNVESNRINDTFPFWLSSLPKLQVLV--------LRSNAFHGPIHEA 696

  Fly  1018 ---DLEMLDISNFRLHYFEYGCLDSLPHLRSLKLTAYSHL----EHFNIPHLLRHHYNIRQLWIE 1075
               :|.::|||:.|.:       .:||....:|.:|.|.|    :..|..::             
plant   697 TFPELRIIDISHNRFN-------GTLPTEYFVKWSAMSSLGKNEDQSNEKYM------------- 741

  Fly  1076 APQPFTRIVKKGSG--PTQEMQTLQLGNPTDLQREMEGHLPSKLTNITFSGPQFTNLNERILRGM 1138
                       |||  ....|..:..|...:|.|     :.:..|.:.|||.:|.....:.: |:
plant   742 -----------GSGLYYQDSMVLMNKGVAMELVR-----ILTIYTAVDFSGNRFEGEIPKSI-GL 789

  Fly  1139 RSPYLYMQLFNTSLQALPPNFFKYMGRVRNI-SLDIRYHNRNLKKIPNPNTGAVPY-LPNSVFLT 1201
            ....|.:.|.|.:.....|:   .||.:..: |||:.         .|..||.:|. |.:..||.
plant   790 LKELLVLSLSNNAFSGHMPS---SMGNLTALESLDVS---------KNKLTGEIPQELGDLSFLA 842

  Fly  1202 DLKMSHTDLNCDCDLGWVEFWQRKRRQYICSSQTWTDTVFRTFMNSPC---------QVYGRHNC 1257
            .:..||..|     .|.|...|:...|. ||:......:|.:.:...|         |.:.....
plant   843 YMNFSHNQL-----AGLVPGGQQFLTQN-CSAFEDNLGLFGSSLEEVCRDIHTPASHQQFETPET 901

  Fly  1258 DEHDDDL 1264
            :|.|:||
plant   902 EEEDEDL 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566 9/35 (26%)
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380 7/19 (37%)
leucine-rich repeat 376..401 CDD:275380 6/24 (25%)
leucine-rich repeat 426..450 CDD:275378 1/23 (4%)
LRR_RI <448..651 CDD:238064 54/209 (26%)
leucine-rich repeat 451..474 CDD:275380 7/24 (29%)
LRR_8 473..559 CDD:290566 23/85 (27%)
leucine-rich repeat 475..524 CDD:275380 11/48 (23%)
leucine-rich repeat 500..519 CDD:275380 4/18 (22%)
leucine-rich repeat 525..548 CDD:275380 8/22 (36%)
leucine-rich repeat 549..574 CDD:275380 7/24 (29%)
LRR_8 573..633 CDD:290566 16/59 (27%)
leucine-rich repeat 575..598 CDD:275380 2/22 (9%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
LRR_8 622..683 CDD:290566 19/67 (28%)
leucine-rich repeat 623..646 CDD:275380 10/27 (37%)
leucine-rich repeat 647..730 CDD:275380 22/102 (22%)
leucine-rich repeat 648..673 CDD:275380 7/25 (28%)
leucine-rich repeat 674..705 CDD:275380 6/32 (19%)
LRR_8 704..763 CDD:290566 24/84 (29%)
leucine-rich repeat 731..754 CDD:275380 9/31 (29%)
LRR_8 753..813 CDD:290566 12/61 (20%)
leucine-rich repeat 755..778 CDD:275380 6/24 (25%)
leucine-rich repeat 779..802 CDD:275380 2/22 (9%)
leucine-rich repeat 803..823 CDD:275380 8/20 (40%)
leucine-rich repeat 852..876 CDD:275380 7/23 (30%)
LRR_8 854..910 CDD:290566 15/55 (27%)
LRR_RI <877..>1006 CDD:238064 31/132 (23%)
leucine-rich repeat 877..900 CDD:275380 5/22 (23%)
leucine-rich repeat 901..925 CDD:275380 3/24 (13%)
leucine-rich repeat 926..946 CDD:275380 6/20 (30%)
LRR_8 947..1004 CDD:290566 16/58 (28%)
leucine-rich repeat 947..970 CDD:275380 7/23 (30%)
leucine-rich repeat 971..993 CDD:275380 5/22 (23%)
LRR_8 992..1049 CDD:290566 16/61 (26%)
leucine-rich repeat 994..1014 CDD:275380 5/19 (26%)
leucine-rich repeat 1019..1042 CDD:275380 6/22 (27%)
RLP53NP_001332753.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I2000
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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