DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and RLP40

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_566757.2 Gene:RLP40 / 822091 AraportID:AT3G24982 Length:915 Species:Arabidopsis thaliana


Alignment Length:974 Identity:230/974 - (23%)
Similarity:368/974 - (37%) Gaps:296/974 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 LTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRD--NKIKIQKPTETFNAVH 399
            |:.:||.:|.:..|.:..|...|.:..:...:..|.||. |..:..|  |.:.....|   .||.
plant    47 LSCVSPSSFFTFNNPVVGLGACGPHQIQAFTQFKNEFDT-RACNHSDPWNGVWCDDST---GAVT 107

  Fly   400 YTLLKLDLSGDRNDPTNLQTLRKMR----------------------NMRSLSISRLGSSSVGPE 442
            ...|:..|||.....::|.....:|                      |:..||:|..|..:..|.
plant   108 MLQLRACLSGTLKPNSSLFQFHHLRSLLLPHNNFTSSSISSKFGMLNNLEVLSLSSSGFLAQVPF 172

  Fly   443 DFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSI--ENDAFHEIGHSLISLKM 505
            .|.:..: |..|.::...|:|..|.| :::|.|:.||.|.|..|.|  .|.:..|: |.:|.|.:
plant   173 SFSNLSM-LSALVLSNNDLTGSLSFA-RNLRKLRVLDVSYNHFSGILNPNSSLFEL-HHIIYLNL 234

  Fly   506 SH-GYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQG 569
            .: .::.|:||.| ..:|..|:.||.|:|........:   :.||                    
plant   235 RYNNFTSSSLPYE-FGNLNKLEVLDVSSNSFFGQVPPT---ISNL-------------------- 275

  Fly   570 DIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKIN 634
               ::|.|:.|..||.|. |.....:|..|..|||..|........:...:..|.||||:||.:|
plant   276 ---TQLTELYLPLNHFTG-SLPLVQNLTKLSILHLFGNHFSGTIPSSLFTMPFLSYLSLKGNNLN 336

  Fly   635 NLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSH------NQIRQLMYNSSWS 693
            .          .:|:        ||.:     ....|.:|::..:|      ..|.:|:      
plant   337 G----------SIEV--------PNSS-----SSSRLESLHLGENHFEGKILEPISKLI------ 372

  Fly   694 GRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWL 758
                       |:|.||||..|.|.       |.::||                 |.::..|..|
plant   373 -----------NLKELDLSFLNTSY-------PIDLSL-----------------FSSLKSLLLL 402

  Fly   759 DLSYNWIHE--LDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRG-LPDNL 820
            |||.:||.:  |..|:: ....|:::...|..:||.| ::||.:..|..:..|:|.:.| .|:.|
plant   403 DLSGDWISKASLTLDSY-IPSTLEVLRLEHCDISDFP-NVFKTLHNLEYIALSNNRISGKFPEWL 465

  Fly   821 FYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYN 885
            :....:..:.::.|::.....||          |: |.|:.:. |.|:|.::...:|.:|.:|.|
plant   466 WSLPRLSSVFITDNLLTGFEGSS----------EV-LVNSSVQ-ILSLDTNSLEGALPHLPLSIN 518

  Fly   886 YLLRIDDAVFATMP-------KLAVLDLSHNRDLKVMDKSFMG-----LENSL-IKLGLENISLS 937
            |...||:.....:|       .|.|||||:|        :|.|     |.|.| :||...|:. .
plant   519 YFSAIDNRFGGDIPLSICNRSSLDVLDLSYN--------NFTGPIPPCLSNLLYLKLRKNNLE-G 574

  Fly   938 TVPEIRLKY-----LREFRLGYNELP-SIPQELAHNMSNLRMLDLSNNDLTNV-PLMTQALPHLR 995
            ::|:   ||     ||...:|||.|. .:|:.|. |.|.|:.|.:.:|.:.:. |...:|||.|:
plant   575 SIPD---KYYEDTPLRSLDVGYNRLTGKLPRSLI-NCSALQFLSVDHNGIKDTFPFSLKALPKLQ 635

  Fly   996 RLMLSGN----PITSLN---------------NNSFDG-----------------VNEDLEMLDI 1024
            .|:||.|    |::..|               .|...|                 :||||.:..:
plant   636 VLLLSSNKFYGPLSPPNEGPLGFPELRILEIAGNKLTGSFLSSDFFVNWKASSHTMNEDLGLYMV 700

  Fly  1025 ------SNFRLHYFEYGCLDSLPHLRSLKLTAYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFT-- 1081
                  .|:.|.|:|  .:|    ||...|:    :|..|:            |...|...|:  
plant   701 YGKVIFGNYHLTYYE--TID----LRYKGLS----MEQRNV------------LTSSATIDFSGN 743

  Fly  1082 RI---VKKGSGPTQEMQTLQLGNPTDLQREMEGHLPSKLTNITFSGPQFTNLNERILRGMRSPYL 1143
            |:   :.:..|..:.:..|.|.|     ....||:|....|               |:.|.|   
plant   744 RLEGEIPESIGLLKALIALNLSN-----NAFTGHIPLSFAN---------------LKKMES--- 785

  Fly  1144 YMQLFNTSLQALPPN------FFKYMGRVRNISLDIRYHNRNLKKIPNPN--TGAVPYLPNSVF 1199
             :.|.:..|....||      |..|:    |:|     ||:.:.:||...  ||.    |.|.|
plant   786 -LDLSSNQLSGTIPNGLRTLSFLAYV----NVS-----HNQLIGEIPQGTQITGQ----PKSSF 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566 13/50 (26%)
leucine-rich repeat 327..348 CDD:275380 4/10 (40%)
leucine-rich repeat 352..375 CDD:275380 4/22 (18%)
leucine-rich repeat 376..401 CDD:275380 6/26 (23%)
leucine-rich repeat 426..450 CDD:275378 6/23 (26%)
LRR_RI <448..651 CDD:238064 53/205 (26%)
leucine-rich repeat 451..474 CDD:275380 6/22 (27%)
LRR_8 473..559 CDD:290566 25/88 (28%)
leucine-rich repeat 475..524 CDD:275380 17/51 (33%)
leucine-rich repeat 500..519 CDD:275380 6/19 (32%)
leucine-rich repeat 525..548 CDD:275380 5/22 (23%)
leucine-rich repeat 549..574 CDD:275380 1/24 (4%)
LRR_8 573..633 CDD:290566 20/59 (34%)
leucine-rich repeat 575..598 CDD:275380 8/22 (36%)
leucine-rich repeat 599..622 CDD:275380 5/22 (23%)
LRR_8 622..683 CDD:290566 14/66 (21%)
leucine-rich repeat 623..646 CDD:275380 8/22 (36%)
leucine-rich repeat 647..730 CDD:275380 17/88 (19%)
leucine-rich repeat 648..673 CDD:275380 4/24 (17%)
leucine-rich repeat 674..705 CDD:275380 4/36 (11%)
LRR_8 704..763 CDD:290566 17/58 (29%)
leucine-rich repeat 731..754 CDD:275380 2/22 (9%)
LRR_8 753..813 CDD:290566 19/61 (31%)
leucine-rich repeat 755..778 CDD:275380 9/24 (38%)
leucine-rich repeat 779..802 CDD:275380 7/22 (32%)
leucine-rich repeat 803..823 CDD:275380 6/20 (30%)
leucine-rich repeat 852..876 CDD:275380 6/23 (26%)
LRR_8 854..910 CDD:290566 20/62 (32%)
LRR_RI <877..>1006 CDD:238064 49/152 (32%)
leucine-rich repeat 877..900 CDD:275380 8/29 (28%)
leucine-rich repeat 901..925 CDD:275380 10/28 (36%)
leucine-rich repeat 926..946 CDD:275380 5/20 (25%)
LRR_8 947..1004 CDD:290566 22/62 (35%)
leucine-rich repeat 947..970 CDD:275380 9/23 (39%)
leucine-rich repeat 971..993 CDD:275380 6/22 (27%)
LRR_8 992..1049 CDD:290566 21/98 (21%)
leucine-rich repeat 994..1014 CDD:275380 8/38 (21%)
leucine-rich repeat 1019..1042 CDD:275380 6/28 (21%)
RLP40NP_566757.2 LRR_RI 97..>263 CDD:238064 44/172 (26%)
LRR_8 130..190 CDD:290566 10/60 (17%)
leucine-rich repeat 131..155 CDD:275380 1/23 (4%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..202 CDD:275380 6/22 (27%)
LRR_8 201..264 CDD:290566 23/64 (36%)
leucine-rich repeat 203..228 CDD:275380 9/25 (36%)
leucine-rich repeat 229..253 CDD:275380 7/24 (29%)
leucine-rich repeat 254..277 CDD:275380 7/48 (15%)
leucine-rich repeat 278..300 CDD:275380 8/22 (36%)
leucine-rich repeat 301..324 CDD:275380 5/22 (23%)
leucine-rich repeat 325..349 CDD:275380 11/46 (24%)
leucine-rich repeat 350..371 CDD:275380 4/20 (20%)
LRR_8 422..481 CDD:290566 14/59 (24%)
leucine-rich repeat 424..446 CDD:275380 7/22 (32%)
leucine-rich repeat 447..468 CDD:275380 6/20 (30%)
leucine-rich repeat 471..495 CDD:275380 6/34 (18%)
leucine-rich repeat 517..540 CDD:275380 5/22 (23%)
leucine-rich repeat 541..585 CDD:275380 18/55 (33%)
LRR_8 560..620 CDD:290566 21/64 (33%)
leucine-rich repeat 563..583 CDD:275380 7/23 (30%)
leucine-rich repeat 586..609 CDD:275380 9/23 (39%)
leucine-rich repeat 610..633 CDD:275380 6/22 (27%)
leucine-rich repeat 634..660 CDD:275380 7/25 (28%)
leucine-rich repeat 735..758 CDD:275380 4/22 (18%)
leucine-rich repeat 759..782 CDD:275380 8/42 (19%)
LRR_8 762..817 CDD:290566 20/87 (23%)
leucine-rich repeat 783..806 CDD:275380 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I2000
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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