DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and RLP35

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_001319521.1 Gene:RLP35 / 820279 AraportID:AT3G11080 Length:943 Species:Arabidopsis thaliana


Alignment Length:907 Identity:227/907 - (25%)
Similarity:367/907 - (40%) Gaps:226/907 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 LEDLQITRASLSGIQSHAFKHVRGLKRLDFSEN---GI--SSIENDAFHEIGHSLISLKMSHGYS 510
            |..|.:|:..|.|....:..::..|..|..|.|   |:  |||||.:      .|.||.:|....
plant   127 LRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLS------RLTSLHLSSNQF 185

  Fly   511 GSALPAE--PLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHS 573
            ...:|:.  .|.||||   |:.|:|..|....:|...|.||..|.|..|        .|.|.|.|
plant   186 SGQIPSSIGNLSHLTS---LELSSNQFSGQIPSSIGNLSNLTFLSLPSN--------DFFGQIPS 239

  Fly   574 ------KLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNK 632
                  :|..:.|.:|:.......:|.:|..|..|.:|.||:......:.:||..|..|.|..|:
plant   240 SIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQ 304

  Fly   633 -----------INNLAD-------------ESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSN 673
                       ::||.|             .|..|:|.|..||::.|||.          |||..
plant   305 FTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLN----------GTLHF 359

  Fly   674 LNVNVSHNQIRQLMYNSSWSGRNEHGGMYHS-----NIKILDLSHNNISIIHPGYFRPAEI---- 729
            .|:: |.:.::.|:..|:    |..|.:..|     |:.:.||||.|...      ||.:.    
plant   360 GNIS-SPSNLQYLIIGSN----NFIGTIPRSLSRFVNLTLFDLSHLNTQC------RPVDFSIFS 413

  Fly   730 ---SLTHLHLGYNSLMNTTRDVFGNMPH---LQWLDLSYNWIHELDFDAFKN---TKQLQLVFFG 785
               ||..|.|.|  |..||.|:...:|:   |:.||:|.|.:...:..:..:   ::.:|.::..
plant   414 HLKSLDDLRLSY--LTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLS 476

  Fly   786 HNYLSDIPQDIFKPVQGLRIVDFSHNHLRG--------LPDNLFYNGGMEKLDVSHNMMLKIPSS 842
            ...::|.| :|.:....|..:|.|:|.::|        || ||||      |::|:|..:...||
plant   477 GCGITDFP-EILRTQHELGFLDVSNNKIKGQVPGWLWTLP-NLFY------LNLSNNTFISFESS 533

  Fly   843 S----LSSLAALTLCELHLS-NNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLA 902
            |    |||:...::..|..| |||...|.|....  .|||..||:|.|                 
plant   534 SKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICG--LRSLNTLDLSEN----------------- 579

  Fly   903 VLDLSHNRDL-KVMDKSFMGLENSLIKLGLENISLS-TVPEIRLKYLREFRLGYNEL-PSIPQEL 964
                ::|..: :.|:|    |:::|..|.|...:|| .:|:...:.||...:|:|.| ..:|:.|
plant   580 ----NYNGSIPRCMEK----LKSTLFVLNLRQNNLSGGLPKHIFESLRSLDVGHNLLVGKLPRSL 636

  Fly   965 AHNMSNLRMLDLSNNDLTNV-PLMTQALPHLRRLMLSGNPITSLNNNSFDG-VNE----DLEMLD 1023
            . ..|||.:|::.:|.:.:. |....:|..|:.|:        |.:|:|.| ::|    :|.::|
plant   637 I-RFSNLEVLNVESNRINDTFPFWLSSLSKLQVLV--------LRSNAFHGPIHEATFPELRIID 692

  Fly  1024 ISNFRLHYFEYGCLDSLPHLRSLKLTAYSHL----EHFNIPHLLRHHYNIRQLWIEAPQPFTRIV 1084
            ||:   ::|.    .:||....:|.:|.|.|    :..|..::                      
plant   693 ISH---NHFN----GTLPTEYFVKWSAMSSLGKNEDQSNEKYM---------------------- 728

  Fly  1085 KKGSG--PTQEMQTLQLGNPTDLQREMEGHLPSKLTNITFSGPQFTNLNERILRGMRSPYLYMQL 1147
              |||  ....|..:..|...:|.|     :.:..|.:.|||.:|.....:.: |:....|.:.|
plant   729 --GSGLYYQDSMVLMNKGLAMELVR-----ILTIYTALDFSGNKFEGEIPKSI-GLLKELLVLNL 785

  Fly  1148 FNTSLQALPPNFFKYMGRVRNI-SLDIRYHNRNLKKIPNPNTGAVPY-LPNSVFLTDLKMSHTDL 1210
            .|.:.....|:   .||.:..: |||:.         .|..||.:|. |.:..||..:..||..|
plant   786 SNNAFGGHIPS---SMGNLTALESLDVS---------QNKLTGEIPQELGDLSFLAYMNFSHNQL 838

  Fly  1211 NCDCDLGWVEFWQRKRRQYICSSQTWTDTVFRTFMNSPCQVYGRHNCDEHDDDLRETRCENK 1272
                 .|.|....:.|||. ||:......:|...::..|:  .:|......::..||..|::
plant   839 -----AGLVPGGTQFRRQN-CSAFENNLGLFGPSLDEVCR--DKHTPASQQNETTETEEEDE 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
leucine-rich repeat 376..401 CDD:275380
leucine-rich repeat 426..450 CDD:275378
LRR_RI <448..651 CDD:238064 63/236 (27%)
leucine-rich repeat 451..474 CDD:275380 5/22 (23%)
LRR_8 473..559 CDD:290566 31/92 (34%)
leucine-rich repeat 475..524 CDD:275380 18/55 (33%)
leucine-rich repeat 500..519 CDD:275380 5/20 (25%)
leucine-rich repeat 525..548 CDD:275380 6/22 (27%)
leucine-rich repeat 549..574 CDD:275380 8/30 (27%)
LRR_8 573..633 CDD:290566 17/76 (22%)
leucine-rich repeat 575..598 CDD:275380 5/22 (23%)
leucine-rich repeat 599..622 CDD:275380 7/22 (32%)
LRR_8 622..683 CDD:290566 21/84 (25%)
leucine-rich repeat 623..646 CDD:275380 9/46 (20%)
leucine-rich repeat 647..730 CDD:275380 24/94 (26%)
leucine-rich repeat 648..673 CDD:275380 8/24 (33%)
leucine-rich repeat 674..705 CDD:275380 7/35 (20%)
LRR_8 704..763 CDD:290566 23/73 (32%)
leucine-rich repeat 731..754 CDD:275380 8/22 (36%)
LRR_8 753..813 CDD:290566 14/65 (22%)
leucine-rich repeat 755..778 CDD:275380 5/25 (20%)
leucine-rich repeat 779..802 CDD:275380 4/22 (18%)
leucine-rich repeat 803..823 CDD:275380 10/27 (37%)
leucine-rich repeat 852..876 CDD:275380 7/24 (29%)
LRR_8 854..910 CDD:290566 14/56 (25%)
LRR_RI <877..>1006 CDD:238064 31/132 (23%)
leucine-rich repeat 877..900 CDD:275380 5/22 (23%)
leucine-rich repeat 901..925 CDD:275380 4/24 (17%)
leucine-rich repeat 926..946 CDD:275380 6/20 (30%)
LRR_8 947..1004 CDD:290566 16/58 (28%)
leucine-rich repeat 947..970 CDD:275380 7/23 (30%)
leucine-rich repeat 971..993 CDD:275380 5/22 (23%)
LRR_8 992..1049 CDD:290566 15/61 (25%)
leucine-rich repeat 994..1014 CDD:275380 5/19 (26%)
leucine-rich repeat 1019..1042 CDD:275380 6/22 (27%)
RLP35NP_001319521.1 LRRNT_2 39..95 CDD:311940
PLN00113 79..>658 CDD:331614 161/606 (27%)
leucine-rich repeat 103..123 CDD:275380
leucine-rich repeat 127..150 CDD:275380 5/22 (23%)
leucine-rich repeat 151..174 CDD:275380 10/28 (36%)
leucine-rich repeat 175..198 CDD:275380 6/22 (27%)
leucine-rich repeat 199..222 CDD:275380 9/25 (36%)
leucine-rich repeat 223..246 CDD:275380 8/30 (27%)
leucine-rich repeat 247..270 CDD:275380 5/22 (23%)
leucine-rich repeat 271..294 CDD:275380 7/22 (32%)
leucine-rich repeat 295..318 CDD:275380 4/22 (18%)
leucine-rich repeat 319..337 CDD:275380 2/17 (12%)
leucine-rich repeat 343..367 CDD:275380 11/34 (32%)
leucine-rich repeat 368..388 CDD:275380 5/23 (22%)
leucine-rich repeat 392..417 CDD:275380 7/30 (23%)
leucine-rich repeat 443..469 CDD:275380 5/25 (20%)
leucine-rich repeat 470..492 CDD:275380 4/22 (18%)
leucine-rich repeat 493..516 CDD:275380 7/23 (30%)
leucine-rich repeat 517..541 CDD:275380 10/29 (34%)
leucine-rich repeat 542..570 CDD:275380 7/29 (24%)
leucine-rich repeat 571..594 CDD:275380 9/47 (19%)
leucine-rich repeat 596..617 CDD:275380 6/20 (30%)
leucine-rich repeat 618..641 CDD:275380 7/23 (30%)
LRR_8 640..698 CDD:316378 18/68 (26%)
leucine-rich repeat 642..665 CDD:275380 5/22 (23%)
leucine-rich repeat 716..803 CDD:275380 21/119 (18%)
PLN00113 <758..864 CDD:331614 31/124 (25%)
leucine-rich repeat 804..825 CDD:275380 8/29 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I2000
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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