DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and RLP19

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_179112.1 Gene:RLP19 / 815997 AraportID:AT2G15080 Length:983 Species:Arabidopsis thaliana


Alignment Length:1001 Identity:230/1001 - (22%)
Similarity:383/1001 - (38%) Gaps:244/1001 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   371 NNFDVLRVISMRDNKIKIQKPTETFN------------AVHYTLLKLDLS-----GDRNDPTNLQ 418
            |.|:.|.. |..|:.|.::..:.|.|            |....:::||||     |..|..::|.
plant    43 NEFETLEE-SCFDSNIPLKTESWTNNSDCCYWDGIKCDAKFGDVIELDLSFSCLRGQLNSNSSLF 106

  Fly   419 TLRKMRNMRSLSISRLGSSSVG--PEDFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFS 481
            .|.::|.:.:|.:|  .:..:|  |...:... .|..|.::|...||....:..::..|..:|||
plant   107 RLPQLRFLTTLDLS--NNDFIGQIPSSLETLS-NLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFS 168

  Fly   482 ENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFL 546
            .|..|.....:...:.| |.|..:|:......:|:. :.:|:.|..|..|.|.......:|...|
plant   169 HNNFSGQIPSSLGYLSH-LTSFNLSYNNFSGRVPSS-IGNLSYLTTLRLSRNSFFGELPSSLGSL 231

  Fly   547 KNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQH----------TFFDLEALRK 601
            .:|..|.|..|.        |.|.|.|.|..:|    |||||..|          :..:|..|..
plant   232 FHLTDLILDTNH--------FVGKIPSSLGNLS----HLTSIDLHKNNFVGEIPFSLGNLSCLTS 284

  Fly   602 LHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQ----LPNFNF 662
            ..|.||.|......:|.||::|:.|:::.||::.....:..||.||..|.:..|:    ||:   
plant   285 FILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLTGTLPS--- 346

  Fly   663 DYFDQVGTLSNLNV-NVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRP 726
                .:.:||||.: :.:.|.....:.:|.::         ..::|.:.|.:|.::    |....
plant   347 ----NMSSLSNLKLFDATENHFTGPLPSSLFN---------IPSLKTITLENNQLN----GSLGF 394

  Fly   727 AEIS----LTHLHLGYNSLMNTTRDVFGNMPHLQWLDLS-YNWIHELDFDAFKNTKQLQLVFFGH 786
            ..||    ||.|.||.|:...........:.:|:.|||| ||....:||..|.:.|.::.:...|
plant   395 GNISSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIEYLNLSH 459

  Fly   787 -NYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSLAAL 850
             |..:.|  |:::.:...:::|                    .||:|.:.:.....||||:.:.:
plant   460 LNTTTTI--DMYEILSSFKLLD--------------------TLDLSGSHVSTTNKSSLSNSSLV 502

  Fly   851 TLCELHLS----NNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRD 911
            .:.:|:||    ..|...:.|.:|      :..||||.|.:..........:|.|..::||:|  
plant   503 LISQLYLSGCGITEFPKFLRSQEL------MLTLDISNNKIKGQVPGWLWMLPVLNYVNLSNN-- 559

  Fly   912 LKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKYLREFRLGYNELPSIPQELAHNMSNLRMLDL 976
                  :|:|.|.| .||||  .|:...|.:|..:........| :||...||.:    |..||.
plant   560 ------TFIGFERS-TKLGL--TSIQEPPAMRQLFCSNNNFTGN-IPSFICELPY----LSTLDF 610

  Fly   977 SNNDLT-NVPLMTQAL--PHLRRLMLSGNPITS-LNNNSFDGVNEDLEMLDISNFRLHYFEYGCL 1037
            |||... ::|.....:  |:|:.|.|..|.::. |..|.|    |.|..||:.:.:|    .|.|
plant   611 SNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENIF----ESLISLDVGHNQL----VGKL 667

  Fly  1038 D-SLPHLRSLKLTAYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFTRIVKKGS---GPTQEMQTLQ 1098
            . ||.|:.||.|.   ::|...|....       .||:.:.|....:|.:.:   ||.::.|..:
plant   668 PRSLSHISSLGLL---NVESNKISDTF-------PLWLSSLQELQVLVLRSNAFYGPIEKTQFSK 722

  Fly  1099 L------GNPTDLQREMEGHLPSK----------------------------------------- 1116
            |      ||      :..|.||:.                                         
plant   723 LRIIDISGN------QFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMSTDYFYFDSMVLM 781

  Fly  1117 --------------LTNITFSGPQFTNLNERILRGMRSPYLYMQLFNTSLQALPPNFFKYMGRVR 1167
                          .|.|.|||.:|.....:.:..::.    :.:.|.|..||..:....||.:.
plant   782 NKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKE----LHVLNLSNNALSGHIASSMGNLM 842

  Fly  1168 NI-SLDIRYHNRNLKKIPNPNTGAVPY-LPNSVFLTDLKMSHTDLNCDCDL--GWVEFWQRKRRQ 1228
            .: |||:.         .|..:|.:|. |....:|..:..||..|   ..|  |..:|..:|   
plant   843 ALESLDVS---------QNKLSGEIPQELGKLTYLAYMNFSHNQL---VGLLPGGTQFQTQK--- 892

  Fly  1229 YICSSQTWTDTVFRTFMNSPCQVYGR 1254
              |||......::...:...|.::|:
plant   893 --CSSFEDNHGLYGPSLEKICDIHGK 916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566 5/14 (36%)
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380 2/3 (67%)
leucine-rich repeat 376..401 CDD:275380 7/36 (19%)
leucine-rich repeat 426..450 CDD:275378 4/25 (16%)
LRR_RI <448..651 CDD:238064 56/212 (26%)
leucine-rich repeat 451..474 CDD:275380 5/22 (23%)
LRR_8 473..559 CDD:290566 22/85 (26%)
leucine-rich repeat 475..524 CDD:275380 12/48 (25%)
leucine-rich repeat 500..519 CDD:275380 4/18 (22%)
leucine-rich repeat 525..548 CDD:275380 6/22 (27%)
leucine-rich repeat 549..574 CDD:275380 7/24 (29%)
LRR_8 573..633 CDD:290566 21/69 (30%)
leucine-rich repeat 575..598 CDD:275380 9/32 (28%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
LRR_8 622..683 CDD:290566 17/65 (26%)
leucine-rich repeat 623..646 CDD:275380 6/22 (27%)
leucine-rich repeat 647..730 CDD:275380 15/87 (17%)
leucine-rich repeat 648..673 CDD:275380 5/28 (18%)
leucine-rich repeat 674..705 CDD:275380 3/31 (10%)
LRR_8 704..763 CDD:290566 17/63 (27%)
leucine-rich repeat 731..754 CDD:275380 6/22 (27%)
LRR_8 753..813 CDD:290566 16/61 (26%)
leucine-rich repeat 755..778 CDD:275380 10/23 (43%)
leucine-rich repeat 779..802 CDD:275380 4/23 (17%)
leucine-rich repeat 803..823 CDD:275380 1/19 (5%)
leucine-rich repeat 852..876 CDD:275380 6/27 (22%)
LRR_8 854..910 CDD:290566 15/59 (25%)
LRR_RI <877..>1006 CDD:238064 38/131 (29%)
leucine-rich repeat 877..900 CDD:275380 5/22 (23%)
leucine-rich repeat 901..925 CDD:275380 7/23 (30%)
leucine-rich repeat 926..946 CDD:275380 7/19 (37%)
LRR_8 947..1004 CDD:290566 17/59 (29%)
leucine-rich repeat 947..970 CDD:275380 5/22 (23%)
leucine-rich repeat 971..993 CDD:275380 7/24 (29%)
LRR_8 992..1049 CDD:290566 20/58 (34%)
leucine-rich repeat 994..1014 CDD:275380 7/20 (35%)
leucine-rich repeat 1019..1042 CDD:275380 8/23 (35%)
RLP19NP_179112.1 PLN00113 3..>646 CDD:331614 167/684 (24%)
leucine-rich repeat 114..137 CDD:275380 4/25 (16%)
leucine-rich repeat 138..161 CDD:275380 5/22 (23%)
leucine-rich repeat 162..185 CDD:275380 6/22 (27%)
leucine-rich repeat 186..209 CDD:275380 5/23 (22%)
leucine-rich repeat 210..233 CDD:275380 6/22 (27%)
leucine-rich repeat 234..257 CDD:275380 10/34 (29%)
leucine-rich repeat 258..281 CDD:275380 6/22 (27%)
leucine-rich repeat 282..305 CDD:275380 8/22 (36%)
leucine-rich repeat 306..329 CDD:275380 6/22 (27%)
leucine-rich repeat 330..351 CDD:275380 5/27 (19%)
leucine-rich repeat 354..377 CDD:275380 3/31 (10%)
leucine-rich repeat 378..402 CDD:275380 6/27 (22%)
leucine-rich repeat 403..424 CDD:275380 6/20 (30%)
leucine-rich repeat 427..451 CDD:275380 10/23 (43%)
leucine-rich repeat 452..477 CDD:275380 4/26 (15%)
leucine-rich repeat 507..526 CDD:275380 5/18 (28%)
leucine-rich repeat 527..550 CDD:275380 5/22 (23%)
leucine-rich repeat 551..574 CDD:275380 12/33 (36%)
leucine-rich repeat 575..604 CDD:275380 7/29 (24%)
PLN00113 <604..692 CDD:331614 30/109 (28%)
leucine-rich repeat 605..630 CDD:275380 7/24 (29%)
leucine-rich repeat 631..655 CDD:275380 9/27 (33%)
PLN00113 <656..739 CDD:331614 25/102 (25%)
leucine-rich repeat 656..676 CDD:275380 8/23 (35%)
leucine-rich repeat 677..700 CDD:275380 6/32 (19%)
leucine-rich repeat 701..722 CDD:275380 4/20 (20%)
leucine-rich repeat 723..795 CDD:275380 6/77 (8%)
leucine-rich repeat 796..819 CDD:275380 6/22 (27%)
PLN00113 <808..962 CDD:331614 26/130 (20%)
leucine-rich repeat 820..843 CDD:275380 6/22 (27%)
leucine-rich repeat 844..867 CDD:275380 7/31 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I2000
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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