DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and lrfn2

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:XP_001338275.1 Gene:lrfn2 / 797812 -ID:- Length:780 Species:Danio rerio


Alignment Length:664 Identity:129/664 - (19%)
Similarity:232/664 - (34%) Gaps:226/664 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 CTCSKSSTDLGIVHCKNVPFPALPRMVNQSKVFMLHMENTGLREIEPYFLQSTGMYRLKISGNHL 114
            |.|...|..||.: |.:.....:|..:::             |.:|           |::.||::
Zfish    25 CVCQNLSESLGTL-CPSKGLLFVPPDIDR-------------RTVE-----------LRLGGNYI 64

  Fly   115 TEIPDDAFTGLERSLWELILPQNDLVEIPSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLEDSLQ 179
            .:|....||.: ..|.:|.|.:|.:..|...|...|:.||.|.|..|.:|.:..|..|||. :||
Zfish    65 IKITQQDFTNM-TGLVDLTLSRNTISFIQPFSFVDLETLRSLHLDSNRLTELGPDVLRGLV-NLQ 127

  Fly   180 TLILRENCISQLMSHSFSGLLI-LETLDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYD 243
            .|||..|.::.:...:|..||: ||.||||.||                         |..||:|
Zfish   128 HLILNNNQLTHISKETFDDLLLTLEDLDLSYNN-------------------------LRGIPWD 167

  Fly   244 ALGPLKSLRTLDISHNVIWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPNSF---------- 298
            |:..:.:|..|.:.||:|..::.....:::...:|:|.:     |.::.|||:..          
Zfish   168 AIRKMLNLHQLSLDHNLINHIAEGTFTDLEKLARLDLTS-----NRLQKLPPDPIFARSQSNIVL 227

  Fly   299 -KYFDTVNRTFFDGNPIHTLREDAFKPARIREIYMRYCGLTNISPVAFDSLVNSLQILDLSGNN- 361
             ..|..|....|.|||:|...|..:.....||..|..|.    ||.:            |.|.. 
Zfish   228 STPFAPVLSLSFGGNPLHCNCEILWLRRLEREDDMETCA----SPPS------------LKGRYF 276

  Fly   362 --------------LTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVHYTLLKLDLSGDRN 412
                          :|:..|||.       |:..:...::.:...:....:|:..          
Zfish   277 WYVREEEFVCEPPLITQHTHKLL-------VLEGQTASLRCKAVGDPMPFIHWIA---------- 324

  Fly   413 DPTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKR 477
             |.:    |.:.|....::...|:..:.....||:|.    .....|:.:|              
Zfish   325 -PDD----RLISNSSRATVYENGTLDIAITTSKDYGT----FTCIAANAAG-------------- 366

  Fly   478 LDFSENGISSIENDAFHEIGHSLISL-KMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDT 541
                       |:.|..|:  |:|.| .:|:|.:.::.|...|..:||..:              
Zfish   367 -----------ESTASIEL--SIIQLPHLSNGTNRTSQPKSRLSDITSSTK-------------- 404

  Fly   542 SFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDD 606
                                    |.:|:..::.|::       .|:|:.|  .:.||.|.    
Zfish   405 ------------------------TSKGETKAQPEQV-------VSVSEVT--GVSALIKW---- 432

  Fly   607 NKIDKIERRAFMNLDELEYLSLRGNKINNLADES---FQNLPKLEILDMAFNQLPNFNFD----- 663
             .:.|:..:  :.:.:|:|         |.:::.   ::.:|.:....:..|.:|...:|     
Zfish   433 -MVSKVSPK--VKMYQLQY---------NCSEDDVLIYRMIPAISRSFLVNNLMPGMQYDLCVLA 485

  Fly   664 -YFDQVGTLSNLNV 676
             :.|...||:..|:
Zfish   486 IWEDTATTLTATNI 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 2/18 (11%)
LRR_8 102..163 CDD:290566 18/60 (30%)
leucine-rich repeat 104..128 CDD:275380 6/23 (26%)
LRR_RI <128..261 CDD:238064 43/133 (32%)
leucine-rich repeat 129..152 CDD:275380 7/22 (32%)
LRR_8 152..212 CDD:290566 26/60 (43%)
leucine-rich repeat 153..177 CDD:275380 10/23 (43%)
leucine-rich repeat 178..201 CDD:275380 8/22 (36%)
LRR_8 202..261 CDD:290566 17/58 (29%)
leucine-rich repeat 202..226 CDD:275380 8/23 (35%)
leucine-rich repeat 227..250 CDD:275380 5/22 (23%)
leucine-rich repeat 251..279 CDD:275380 5/27 (19%)
leucine-rich repeat 280..326 CDD:275380 13/56 (23%)
LRR_8 326..386 CDD:290566 13/74 (18%)
leucine-rich repeat 327..348 CDD:275380 6/20 (30%)
leucine-rich repeat 352..375 CDD:275380 6/37 (16%)
leucine-rich repeat 376..401 CDD:275380 2/24 (8%)
leucine-rich repeat 426..450 CDD:275378 4/23 (17%)
LRR_RI <448..651 CDD:238064 29/206 (14%)
leucine-rich repeat 451..474 CDD:275380 2/22 (9%)
LRR_8 473..559 CDD:290566 12/86 (14%)
leucine-rich repeat 475..524 CDD:275380 10/49 (20%)
leucine-rich repeat 500..519 CDD:275380 5/19 (26%)
leucine-rich repeat 525..548 CDD:275380 0/22 (0%)
leucine-rich repeat 549..574 CDD:275380 2/24 (8%)
LRR_8 573..633 CDD:290566 10/59 (17%)
leucine-rich repeat 575..598 CDD:275380 4/22 (18%)
leucine-rich repeat 599..622 CDD:275380 3/22 (14%)
LRR_8 622..683 CDD:290566 11/64 (17%)
leucine-rich repeat 623..646 CDD:275380 3/25 (12%)
leucine-rich repeat 647..730 CDD:275380 7/36 (19%)
leucine-rich repeat 648..673 CDD:275380 6/30 (20%)
leucine-rich repeat 674..705 CDD:275380 1/3 (33%)
LRR_8 704..763 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 753..813 CDD:290566
leucine-rich repeat 755..778 CDD:275380
leucine-rich repeat 779..802 CDD:275380
leucine-rich repeat 803..823 CDD:275380
leucine-rich repeat 852..876 CDD:275380
LRR_8 854..910 CDD:290566
LRR_RI <877..>1006 CDD:238064
leucine-rich repeat 877..900 CDD:275380
leucine-rich repeat 901..925 CDD:275380
leucine-rich repeat 926..946 CDD:275380
LRR_8 947..1004 CDD:290566
leucine-rich repeat 947..970 CDD:275380
leucine-rich repeat 971..993 CDD:275380
LRR_8 992..1049 CDD:290566
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
lrfn2XP_001338275.1 LRR_RI 27..>209 CDD:238064 61/238 (26%)
leucine-rich repeat 54..77 CDD:275380 7/34 (21%)
LRR_8 76..136 CDD:290566 23/60 (38%)
leucine-rich repeat 78..101 CDD:275380 7/22 (32%)
leucine-rich repeat 102..125 CDD:275380 10/23 (43%)
LRR_8 125..209 CDD:290566 30/113 (27%)
leucine-rich repeat 126..150 CDD:275380 9/23 (39%)
leucine-rich repeat 151..174 CDD:275380 13/47 (28%)
leucine-rich repeat 175..198 CDD:275380 5/22 (23%)
leucine-rich repeat 234..246 CDD:275378 5/11 (45%)
LRRCT 242..286 CDD:214507 12/59 (20%)
I-set 289..376 CDD:254352 18/139 (13%)
Ig_2 303..376 CDD:143241 13/118 (11%)
fn3 418..486 CDD:278470 14/85 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24369
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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