DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and mxra5b

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:XP_017213354.1 Gene:mxra5b / 795448 ZFINID:ZDB-GENE-081104-119 Length:2548 Species:Danio rerio


Alignment Length:1431 Identity:266/1431 - (18%)
Similarity:469/1431 - (32%) Gaps:457/1431 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 CTCSKSSTDLGIVHCKNVPFPALPRMVNQSKVFMLHMENTGLREIEPYFLQSTGMYRLKISGNHL 114
            |.||..:.    |||......|:|..:::.                        :.|:....|.:
Zfish    26 CACSAPAE----VHCTFRALLAVPAGISKQ------------------------VQRINFGFNTI 62

  Fly   115 TEIPDDAFTGLERSLWELILPQNDLVEIPSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLEDSLQ 179
            ::|.|.:|:|| |.|..|::..|::.:||..:.:.|..|:.|.:.||.:|.|...:|.||...::
Zfish    63 SQITDASFSGL-RKLELLMMHGNNVQKIPDGAFQDLVSLQVLKMSYNKLTVITDRTFSGLTGIIR 126

  Fly   180 TLILRENCISQLMSHSFSGLLILETLDLSGNNLFEIDPNVFVD-------GMPRLTRLLLTDNIL 237
             |.|..|.||.:...:|.||..|..|.|..|.|.::.|:.|..       .:..|..|.::||:|
Zfish   127 -LHLDHNHISSIHPQAFLGLTSLRLLHLEANRLQQLHPHTFSTFSVLRRFPVSTLKHLHISDNLL 190

  Fly   238 SEIPYDALGPLKSLRTLDISHNVIWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPNSFKYFD 302
            ..:....|.....|.||.::.|. ||......:....|.:           |..|:....     
Zfish   191 QTLSRSVLENTPQLETLLLTGNP-WSCDCRMRWLQDWSAR-----------HPGVMKCKK----- 238

  Fly   303 TVNRTFFDG-------NPIHTLREDAFKPARIREIYMRYC-GLTNISPVAFDSLVNSLQILDLSG 359
              :|||..|       :|.|      .|.|.:.::....| |.:.|||                |
Zfish   239 --DRTFTSGQLCPLCASPKH------LKAADMLDLKQLVCSGPSIISP----------------G 279

  Fly   360 NNLTKLHHKLFNNFDVLRVISMRDNK--IKIQKPTETFNAVHYTL-----LKLDLSGDRNDPTNL 417
            .|                 ||..|..  :.|.:....|..|.:||     .|:||......|.:.
Zfish   280 RN-----------------ISEEDTSELLPIDRIKPAFGNVSFTLSDEHGTKVDLICQILQPQDS 327

  Fly   418 QTLRKMRNMRSLSISRLGS------SSVGPEDFKDFGVELEDLQITRASLSGIQSHAFKHVRG-- 474
            .|: ...:.:||.|:...:      ..|..:|::.|.           .|....|.|..|:|.  
Zfish   328 TTI-SWNHTKSLQIAANVTLVLDVECPVSRDDYESFW-----------RLLAYYSEAPVHLRREI 380

  Fly   475 -LKRLDFSENGIS-----SIENDAF-------HEIGH------SLISLKMSHGYSGSALPAEPLR 520
             |:|    |..:|     ..|.|.|       :.:.|      ||||:|::..||.|    :.:|
Zfish   381 MLRR----EPALSYRYRQDAEKDGFFYTSLKANVLAHPSWLMQSLISIKLNRPYSTS----KSVR 437

  Fly   521 HLTSLQELDFSNNHISSMSDTSFHFLKNLR---LLELHDNRIEQVLKGTFQG--DIHSKLE---- 576
            .:.|.|        :::.:|.     :|:|   ::| :||:.:........|  ::|.:::    
Zfish   438 LILSTQ--------LTANADE-----ENVRSWVMIE-NDNKTQTSFASVVGGVAEMHCRVQSSGN 488

  Fly   577 -----------EISLRFNHL---TSISQHTFFDLEALRKLHLDDN------KIDKIERRAFMNLD 621
                       ::...|:.:   .|||.....:::.:.  |.|..      ::|          .
Zfish   489 AVIYWMLPNGSKVKSAFSSVDGRVSISSSGKLNIKTIE--HRDSGVYYCIAEVD----------G 541

  Fly   622 ELEYLSLRGNKINNLADESFQNLPKLEI-------------LDMAFNQLPNFNFDYFDQVGTLSN 673
            :::.|..|.:.|     ||...||..|:             |.......|:...::....|.:.|
Zfish   542 DVDVLPFRLSVI-----ESSNPLPNQEVGNSLSRFIGQSAFLTCLTKASPDAEINWVLPDGNVLN 601

  Fly   674 LNVNVS----------HNQIRQLMYNSSWS--GRNEHGGMYHSNIKILDLSHNNISIIHPGYFRP 726
            ...|.|          :..:.||..|..:.  ..|.||         :|:....:::|.....:|
Zfish   602 AKANTSRALLFPNGTLYIPVCQLNDNGYYKCVAMNNHG---------VDVFSTKLTVIRRKLIQP 657

  Fly   727 ------------------------------AEISLTHLHLGYNSLMNTTRDVFGNMPH------- 754
                                          .:||.|.|........|..|  |||:.|       
Zfish   658 LRQYPIIRPQSAAGVSTKVKAFLEDMEEASGDISETRLTPTRRRRPNARR--FGNIRHRRPFRNR 720

  Fly   755 -----------------LQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLS---DIPQ----- 794
                             .:|.||    :.::.....::.|.||.....:...|   ..||     
Zfish   721 AGLPNQRPVNTKNKIDPQKWADL----LSKIRAKTSESNKSLQSGLIDNTESSSGDSGPQEKTFN 781

  Fly   795 -DIFKPVQGLRIVDFSHNHLRGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLS 858
             |::...| ::..| ..|..|..|..|......:.|.:||      |:|:...:..      |:.
Zfish   782 TDVYHTPQ-IKERD-DDNIYRTTPSQLHTTRSNQVLYISH------PTSAPHYVTT------HVQ 832

  Fly   859 NNFISTIHSMDLSNKFRSLRYLDISYNYLLR---------------IDDAVFATMPKLAVLDLSH 908
            :...||:::.:......|:...::.....|.               ||..||||...:.:....:
Zfish   833 DRHASTVNAENNQIYSESVISPELETENELNLPGVKSQIGGFDSGGIDRNVFATASSVRLSSAPN 897

  Fly   909 NRDLKVMDK-SFMGLENSLIKLGLENI------SLSTVPEIRLKYLREFRLGY----NELPSIPQ 962
            :...:..|: .|.|......:..:.|:      |.||...:.||...:....|    :::||:.|
Zfish   898 STQSRGRDRWRFGGRRRIKFRRPISNLPTSRVWSTSTTARVTLKTDDQDASIYPTTPSKVPSVSQ 962

  Fly   963 ELAHNM----------------SNLRMLDLSNNDLT--------------NVPLMTQALPHLR-- 995
            .:...:                .:..:....:|:||              |.....|.:|:.|  
Zfish   963 TIPVTLHVYSTTLSRGIPINPTQSSHIYPTKHNELTNEVEENINHKVKESNFQQTQQVMPNSRFH 1027

  Fly   996 ---------RLMLSGNPITSLNNNSFDGVNEDLEMLD--------------------ISNFRLHY 1031
                     .|.|:.....||.....||.....|.:|                    ::..||.:
Zfish  1028 PTISTNASAVLRLANEDFNSLEKEEQDGSFASAEEMDEYIVPTRKHPTSRLGAKTVPLTTPRLEF 1092

  Fly  1032 FEYGCLDSLPHLRSLKLTAYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFTRIVKKGSGPTQE--- 1093
            ......| :|.:...:::...|.:..:..||...|:  |.:..|.........::|...|:|   
Zfish  1093 TSRLSAD-IPKMDPTEISVTVHTDRLDDFHLPESHF--RDVLRENKSVDFTSAREGVTSTEESVV 1154

  Fly  1094 -----MQTLQLGNPTDLQREMEGHLPSKLT-----NITFSGPQFTNLNERILRGMRSPYLYMQLF 1148
                 .||..|.||....:|.|. :|...|     ::...|.|..:|:..:     ...||..:.
Zfish  1155 SSILQSQTYPLSNPNQSFKEEES-IPLLTTSTQKQSVVSVGTQIKSLDANL-----PNVLYESVT 1213

  Fly  1149 NTS---LQALPPNFFKYMGRVRNISLDIRYHNRNLKK-IPNPNTGAVPYLPNSVFLTDLKMSHTD 1209
            :|.   :.::|        :.:|..|  ...|::.|: :|:..|.:.|........|.:|....|
Zfish  1214 STEESVVSSIP--------QTQNYPL--AKQNQSFKESVPSFTTTSTPKQSRISVGTQIKTLDRD 1268

  Fly  1210 L 1210
            :
Zfish  1269 I 1269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 0/18 (0%)
LRR_8 102..163 CDD:290566 18/60 (30%)
leucine-rich repeat 104..128 CDD:275380 7/23 (30%)
LRR_RI <128..261 CDD:238064 40/139 (29%)
leucine-rich repeat 129..152 CDD:275380 6/22 (27%)
LRR_8 152..212 CDD:290566 21/59 (36%)
leucine-rich repeat 153..177 CDD:275380 9/23 (39%)
leucine-rich repeat 178..201 CDD:275380 8/22 (36%)
LRR_8 202..261 CDD:290566 17/65 (26%)
leucine-rich repeat 202..226 CDD:275380 7/30 (23%)
leucine-rich repeat 227..250 CDD:275380 6/22 (27%)
leucine-rich repeat 251..279 CDD:275380 7/27 (26%)
leucine-rich repeat 280..326 CDD:275380 9/52 (17%)
LRR_8 326..386 CDD:290566 10/62 (16%)
leucine-rich repeat 327..348 CDD:275380 5/21 (24%)
leucine-rich repeat 352..375 CDD:275380 2/22 (9%)
leucine-rich repeat 376..401 CDD:275380 6/26 (23%)
leucine-rich repeat 426..450 CDD:275378 6/29 (21%)
LRR_RI <448..651 CDD:238064 47/265 (18%)
leucine-rich repeat 451..474 CDD:275380 4/22 (18%)
LRR_8 473..559 CDD:290566 26/109 (24%)
leucine-rich repeat 475..524 CDD:275380 17/66 (26%)
leucine-rich repeat 500..519 CDD:275380 7/18 (39%)
leucine-rich repeat 525..548 CDD:275380 2/22 (9%)
leucine-rich repeat 549..574 CDD:275380 6/29 (21%)
LRR_8 573..633 CDD:290566 9/83 (11%)
leucine-rich repeat 575..598 CDD:275380 4/40 (10%)
leucine-rich repeat 599..622 CDD:275380 3/28 (11%)
LRR_8 622..683 CDD:290566 14/83 (17%)
leucine-rich repeat 623..646 CDD:275380 6/22 (27%)
leucine-rich repeat 647..730 CDD:275380 16/137 (12%)
leucine-rich repeat 648..673 CDD:275380 4/37 (11%)
leucine-rich repeat 674..705 CDD:275380 8/42 (19%)
LRR_8 704..763 CDD:290566 16/112 (14%)
leucine-rich repeat 731..754 CDD:275380 7/22 (32%)
LRR_8 753..813 CDD:290566 14/92 (15%)
leucine-rich repeat 755..778 CDD:275380 3/22 (14%)
leucine-rich repeat 779..802 CDD:275380 6/31 (19%)
leucine-rich repeat 803..823 CDD:275380 5/19 (26%)
leucine-rich repeat 852..876 CDD:275380 3/23 (13%)
LRR_8 854..910 CDD:290566 11/70 (16%)
LRR_RI <877..>1006 CDD:238064 29/195 (15%)
leucine-rich repeat 877..900 CDD:275380 7/37 (19%)
leucine-rich repeat 901..925 CDD:275380 3/24 (13%)
leucine-rich repeat 926..946 CDD:275380 5/25 (20%)
LRR_8 947..1004 CDD:290566 13/101 (13%)
leucine-rich repeat 947..970 CDD:275380 4/42 (10%)
leucine-rich repeat 971..993 CDD:275380 5/35 (14%)
LRR_8 992..1049 CDD:290566 14/87 (16%)
leucine-rich repeat 994..1014 CDD:275380 5/30 (17%)
leucine-rich repeat 1019..1042 CDD:275380 5/42 (12%)
mxra5bXP_017213354.1 leucine-rich repeat 33..51 CDD:275380 5/21 (24%)
LRR_8 50..110 CDD:290566 18/84 (21%)
leucine-rich repeat 52..75 CDD:275380 7/23 (30%)
leucine-rich repeat 76..99 CDD:275380 6/22 (27%)
LRR_8 99..158 CDD:290566 21/59 (36%)
leucine-rich repeat 100..123 CDD:275380 9/22 (41%)
leucine-rich repeat 124..147 CDD:275380 8/23 (35%)
LRR_8 146..213 CDD:290566 16/66 (24%)
leucine-rich repeat 148..179 CDD:275380 7/30 (23%)
leucine-rich repeat 180..203 CDD:275380 6/22 (27%)
LRRCT 212..>258 CDD:214507 12/70 (17%)
IG 472..552 CDD:214652 11/91 (12%)
Ig 477..538 CDD:143165 7/62 (11%)
IG 567..649 CDD:214652 13/90 (14%)
Ig 573..639 CDD:299845 10/65 (15%)
IG_like 1583..1666 CDD:214653
Ig 1592..1656 CDD:299845
I-set 1671..1763 CDD:254352
Ig 1686..1763 CDD:299845
IG 1776..1860 CDD:214652
Ig 1783..1860 CDD:299845
I-set 1875..1959 CDD:254352
IGc2 1882..1949 CDD:197706
IG 1979..2062 CDD:214652
Ig 1979..2053 CDD:299845
I-set 2075..2156 CDD:254352
Ig 2082..2146 CDD:299845
IG 2175..2255 CDD:214652
Ig 2180..2255 CDD:299845
IG_like 2271..2351 CDD:214653
IGc2 2276..2343 CDD:197706
IG 2372..2438 CDD:214652
Ig 2377..2438 CDD:143165
IG 2462..2547 CDD:214652
Ig 2471..2544 CDD:143165
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24369
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.100

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