DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and Igfals

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_445781.3 Gene:Igfals / 79438 RGDID:68429 Length:603 Species:Rattus norvegicus


Alignment Length:667 Identity:166/667 - (24%)
Similarity:255/667 - (38%) Gaps:178/667 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ITLMIMIWMSLARASMFDRE---MEETHYPPCTYNVMCTCSKSS-TDLGIVHCKNVPFPALPRMV 76
            :.:::..|::|....:...:   ..:...|.|.  |.||||... ||...|.|.:.....||..:
  Rat    10 LVVLLAFWVALGPCHLQGTDPGASADAEGPQCP--VACTCSHDDYTDELSVFCSSKNLTHLPDDI 72

  Fly    77 -----------------------NQSKVFMLHMENTGLREIEPY-FLQSTGMYRLKISGNHLTEI 117
                                   |.|.:..|:::.:.||.:||. .|....:|.|.:..|.|..:
  Rat    73 PVSTRALWLDGNNLSSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLERNRLRNL 137

  Fly   118 PDDAFTGLERSLWELILPQNDLVEIPSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLEDSLQTLI 182
            ....||... ||..|.|..|.|..:.....:.|..|..|:||:|.:..:....|:|| .:|..|:
  Rat   138 AVGLFTHTP-SLASLSLSSNLLGRLEEGLFQGLSHLWDLNLGWNSLVVLPDTVFQGL-GNLHELV 200

  Fly   183 LRENCISQLMSHSFSGLLILETLDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGP 247
            |..|.::.|....|.||..|..||||.|.|..:..||||. :|||.:|.|..|:::.:...|...
  Rat   201 LAGNKLTYLQPALFCGLGELRELDLSRNALRSVKANVFVH-LPRLQKLYLDRNLITAVAPRAFLG 264

  Fly   248 LKSLRTLDISHNVIWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGN 312
            :|:||.||:|||.:..|. .:|:    ...|.|..|.|.:|.|..|.|.:||             
  Rat   265 MKALRWLDLSHNRVAGLM-EDTF----PGLLGLHVLRLAHNAIASLRPRTFK------------- 311

  Fly   313 PIHTLREDAFKPARIREIYMRYCGLTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLR 377
            .:|.|.|                                   |.|..|.:.:|..:.|.....|.
  Rat   312 DLHFLEE-----------------------------------LQLGHNRIRQLGERTFEGLGQLE 341

  Fly   378 VISMRDNKIKIQKPTE----TFNAVHYTLLKLDLSGDRNDPTNLQTLRKMRNMRSLSISRLGSSS 438
            |:::.||:|     ||    .|:.: :.:..::|||:              .:|||         
  Rat   342 VLTLNDNQI-----TEVRVGAFSGL-FNVAVMNLSGN--------------CLRSL--------- 377

  Fly   439 VGPEDFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISL 503
              ||.......:|..|.:..:.|..::.|.|..:.||:||...:|.|||||.             
  Rat   378 --PERVFQGLDKLHSLHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEE------------- 427

  Fly   504 KMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQ 568
                         :.|..|:.|.|||.:.|.::       |..:.|                 ||
  Rat   428 -------------QSLAGLSELLELDLTTNRLT-------HLPRQL-----------------FQ 455

  Fly   569 GDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKI 633
            |..|  ||.:.|.:|.||::|......|:....|.:..|.::.:....|.:|..|.|||||.|.:
  Rat   456 GLGH--LEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSSLGRLRYLSLRNNSL 518

  Fly   634 NNLADESFQNLPKLEIL 650
                 ::|...|.||.|
  Rat   519 -----QTFSPQPGLERL 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 6/19 (32%)
LRR_8 102..163 CDD:290566 18/60 (30%)
leucine-rich repeat 104..128 CDD:275380 6/23 (26%)
LRR_RI <128..261 CDD:238064 49/132 (37%)
leucine-rich repeat 129..152 CDD:275380 6/22 (27%)
LRR_8 152..212 CDD:290566 22/59 (37%)
leucine-rich repeat 153..177 CDD:275380 8/23 (35%)
leucine-rich repeat 178..201 CDD:275380 8/22 (36%)
LRR_8 202..261 CDD:290566 26/58 (45%)
leucine-rich repeat 202..226 CDD:275380 11/23 (48%)
leucine-rich repeat 227..250 CDD:275380 5/22 (23%)
leucine-rich repeat 251..279 CDD:275380 9/27 (33%)
leucine-rich repeat 280..326 CDD:275380 12/45 (27%)
LRR_8 326..386 CDD:290566 9/59 (15%)
leucine-rich repeat 327..348 CDD:275380 0/20 (0%)
leucine-rich repeat 352..375 CDD:275380 5/22 (23%)
leucine-rich repeat 376..401 CDD:275380 8/28 (29%)
leucine-rich repeat 426..450 CDD:275378 5/23 (22%)
LRR_RI <448..651 CDD:238064 52/203 (26%)
leucine-rich repeat 451..474 CDD:275380 5/22 (23%)
LRR_8 473..559 CDD:290566 19/85 (22%)
leucine-rich repeat 475..524 CDD:275380 11/48 (23%)
leucine-rich repeat 500..519 CDD:275380 0/18 (0%)
leucine-rich repeat 525..548 CDD:275380 6/22 (27%)
leucine-rich repeat 549..574 CDD:275380 5/24 (21%)
LRR_8 573..633 CDD:290566 19/59 (32%)
leucine-rich repeat 575..598 CDD:275380 8/22 (36%)
leucine-rich repeat 599..622 CDD:275380 4/22 (18%)
LRR_8 622..683 CDD:290566 12/29 (41%)
leucine-rich repeat 623..646 CDD:275380 8/22 (36%)
leucine-rich repeat 647..730 CDD:275380 3/4 (75%)
leucine-rich repeat 648..673 CDD:275380 2/3 (67%)
leucine-rich repeat 674..705 CDD:275380
LRR_8 704..763 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 753..813 CDD:290566
leucine-rich repeat 755..778 CDD:275380
leucine-rich repeat 779..802 CDD:275380
leucine-rich repeat 803..823 CDD:275380
leucine-rich repeat 852..876 CDD:275380
LRR_8 854..910 CDD:290566
LRR_RI <877..>1006 CDD:238064
leucine-rich repeat 877..900 CDD:275380
leucine-rich repeat 901..925 CDD:275380
leucine-rich repeat 926..946 CDD:275380
LRR_8 947..1004 CDD:290566
leucine-rich repeat 947..970 CDD:275380
leucine-rich repeat 971..993 CDD:275380
LRR_8 992..1049 CDD:290566
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
IgfalsNP_445781.3 LRRNT 40..78 CDD:214470 12/39 (31%)
leucine-rich repeat 57..75 CDD:275380 4/17 (24%)
PLN00113 68..>494 CDD:215061 139/564 (25%)
LRR 1 75..96 0/20 (0%)
leucine-rich repeat 79..99 CDD:275380 1/19 (5%)
LRR 2 99..120 5/20 (25%)
leucine-rich repeat 103..123 CDD:275380 6/19 (32%)
LRR 3 123..144 5/20 (25%)
LRR 4 147..168 6/20 (30%)
LRR 5 171..192 6/20 (30%)
leucine-rich repeat 175..195 CDD:275380 7/20 (35%)
LRR 6 195..216 6/20 (30%)
leucine-rich repeat 196..219 CDD:275380 8/22 (36%)
LRR 7 219..240 10/20 (50%)
leucine-rich repeat 220..243 CDD:275380 11/23 (48%)
LRR 8 243..264 6/20 (30%)
leucine-rich repeat 244..267 CDD:275380 5/22 (23%)
LRR 9 267..288 9/25 (36%)
leucine-rich repeat 268..291 CDD:275380 9/27 (33%)
LRR 10 291..312 9/33 (27%)
leucine-rich repeat 292..315 CDD:275380 9/35 (26%)
LRR 11 315..336 7/55 (13%)
leucine-rich repeat 316..339 CDD:275380 7/57 (12%)
LRR 12 339..360 8/25 (32%)
leucine-rich repeat 340..363 CDD:275380 8/28 (29%)
LRR 13 363..384 8/45 (18%)
leucine-rich repeat 364..387 CDD:275380 8/47 (17%)
LRR 14 387..408 5/20 (25%)
leucine-rich repeat 388..411 CDD:275380 5/22 (23%)
LRR 15 411..432 11/46 (24%)
leucine-rich repeat 412..435 CDD:275380 11/48 (23%)
LRR 16 435..456 8/44 (18%)
leucine-rich repeat 436..459 CDD:275380 10/46 (22%)
LRR 17 459..480 8/22 (36%)
leucine-rich repeat 460..481 CDD:275380 7/20 (35%)
LRR 18 483..504 3/20 (15%)
leucine-rich repeat 484..507 CDD:275380 4/22 (18%)
LRR_8 486..536 CDD:404697 16/50 (32%)
LRR 19 507..528 9/25 (36%)
TPKR_C2 535..578 CDD:417692
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D299282at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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