DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and Tlr8

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_001094479.1 Gene:Tlr8 / 684440 RGDID:1590327 Length:1029 Species:Rattus norvegicus


Alignment Length:1016 Identity:245/1016 - (24%)
Similarity:402/1016 - (39%) Gaps:304/1016 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 YFLQSTGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQ---NDLVEIPSKSLRHLQKLRHLDL 158
            :.|.|:|...:.:.||.....|.|     |:....|:..:   ..|.|:|....::   :..:||
  Rat    11 FCLLSSGTSAVFLKGNFSRSYPCD-----EKRHNALVTAECNHRQLHEVPQTIGKY---VTDVDL 67

  Fly   159 GYNHITHIQHDSFRGLEDSLQTLILRENCISQLMSHSFSGLLILETLDLSGNNLFEIDPNVFVDG 223
            ..|.|.||.::||:... :|..:.|..|...|..:.:.:|:.|.|...||..|            
  Rat    68 SDNTIMHITNESFQKFR-NLTKINLNHNAKQQHPNENKNGMNITEGAFLSLRN------------ 119

  Fly   224 MPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNETYEIKASTKLNLDNLHLEYN 288
               ||.|||.||.|..||   .|..:||:.|.:..|.|:.::.|.|:.::     ||:.|:|.:|
  Rat   120 ---LTELLLEDNQLYTIP---AGLPESLKELSLIQNNIFQVTKNNTFGLR-----NLERLYLGWN 173

  Fly   289 HIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIREIYMRYCGLTNISPVAFDSLVNSLQ 353
                              .:|..|.|       ||                :...||::|:| |:
  Rat   174 ------------------CYFKCNQI-------FK----------------VEDGAFNNLIN-LK 196

  Fly   354 ILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPT-ETFNAVHYTLLKLDLSGD----RND 413
            :|.||.|||..:..||.::...|.:     :..||...| |.|..:.:.:| |||||:    .|.
  Rat   197 LLSLSFNNLFSVPPKLPSSLSKLFL-----SNAKISTITQEDFKGLEHLIL-LDLSGNCPRCFNA 255

  Fly   414 PTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKRL 478
            |...::.....::|           :.|..|::. .:|..|.::..||..|.|..|.::..||.|
  Rat   256 PFPCESCNLSASIR-----------IHPLAFQNL-TQLRFLNLSSTSLRTIPSTWFDNLTNLKEL 308

  Fly   479 DFSENG-ISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTS 542
            ....|. :..|.:.||                         |..|.|||.||.           |
  Rat   309 HLEFNYLVQEIASGAF-------------------------LTKLPSLQTLDL-----------S 337

  Fly   543 FHFLKNLRLLELHDNRIEQVLKGTFQGDIHSK-LEEISLRFNHLTSISQHTFFDLEALRKLHLDD 606
            |:|                         ||.: |:.|::..|         |..|.:||||||..
  Rat   338 FNF-------------------------IHKEYLQYITISPN---------FSMLRSLRKLHLKG 368

  Fly   607 NKIDKIERRAF---MNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQV 668
            ....::::..|   .||..|..::|..|.|..:..::||:.|.|:::.::.|::.:. .|..|  
  Rat   369 YVFRELKKEHFKPLQNLPNLTTINLGINFIEKIDFKAFQDFPNLKVIYLSGNRIASV-IDGTD-- 430

  Fly   669 GTLSNLNVNVSHNQIRQLMYNSSWSGR------------NEHGGMYHSNI-----------KILD 710
                                :|||..|            :.|...|||..           |.||
  Rat   431 --------------------HSSWRNRLRKPLSTDYDEFDPHMNFYHSTEPLIKPQCTTYGKALD 475

  Fly   711 LSHNNISIIHPGYFRPAEISLTHLHLGYNS---LMNTTRDVFGNMPHLQWLDLSYNWIHELDFDA 772
            ||.|||.:|....|...: .:..|:|.:|:   ::|.|.  |.:|||:::|||:.|   .|||| 
  Rat   476 LSLNNIFVIGKSQFEGFQ-DIACLNLSFNANGQVLNGTE--FSSMPHIKYLDLTNN---RLDFD- 533

  Fly   773 FKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHN----HLRGLPDNLFYNGGMEKLDVSH 833
                                ....|..:..|.::|.|||    .:.|:...|.:...:.||.|  
  Rat   534 --------------------DNQTFSDLHDLEVLDLSHNAHYFSIAGVTHRLGFIQNLIKLKV-- 576

  Fly   834 NMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDA----- 893
                                 |:||:|.|.|: :.:...:.:||:.|..|.|.|.|:.:|     
  Rat   577 ---------------------LNLSHNGIYTL-TDEYKLQSKSLKELVFSGNRLDRLWNANDGKY 619

  Fly   894 --VFATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKY---LREFRLG 953
              :|.::..|..||||:|...::.:::|:.|..||.:|.:.:..|.......|:|   |....||
  Rat   620 WSIFTSLETLTRLDLSYNNLQQIPNEAFLNLPQSLQELHINDNRLRFFNWTLLQYFPHLHVLDLG 684

  Fly   954 YNELPSIPQELAHNMSNLRMLDLSNNDLTNVP--LMTQALPHLRRLMLSGNPITSLNNNSFD-GV 1015
            .|||..:...|:....:|:.|.|::|..:::|  .:::| .:|..|.||.|.|..:|.:|.. ..
  Rat   685 RNELYFLTNCLSKFTHSLKTLLLNHNHFSHLPAGFLSEA-RNLVYLDLSFNTIKMINKSSLQTET 748

  Fly  1016 NEDLEMLDISNFRLHYFEYGC--------LDSLPHLRSLKL 1048
            ..:|.:||:..   ::|:..|        |:..||:|..:|
  Rat   749 KTNLSVLDLQG---NHFDCTCDISDFRSWLEENPHVRIPRL 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 2/5 (40%)
LRR_8 102..163 CDD:290566 13/63 (21%)
leucine-rich repeat 104..128 CDD:275380 5/23 (22%)
LRR_RI <128..261 CDD:238064 37/135 (27%)
leucine-rich repeat 129..152 CDD:275380 4/25 (16%)
LRR_8 152..212 CDD:290566 17/59 (29%)
leucine-rich repeat 153..177 CDD:275380 8/23 (35%)
leucine-rich repeat 178..201 CDD:275380 5/22 (23%)
LRR_8 202..261 CDD:290566 19/58 (33%)
leucine-rich repeat 202..226 CDD:275380 4/23 (17%)
leucine-rich repeat 227..250 CDD:275380 11/22 (50%)
leucine-rich repeat 251..279 CDD:275380 6/27 (22%)
leucine-rich repeat 280..326 CDD:275380 9/45 (20%)
LRR_8 326..386 CDD:290566 14/59 (24%)
leucine-rich repeat 327..348 CDD:275380 2/20 (10%)
leucine-rich repeat 352..375 CDD:275380 9/22 (41%)
leucine-rich repeat 376..401 CDD:275380 6/25 (24%)
leucine-rich repeat 426..450 CDD:275378 3/23 (13%)
LRR_RI <448..651 CDD:238064 48/207 (23%)
leucine-rich repeat 451..474 CDD:275380 7/22 (32%)
LRR_8 473..559 CDD:290566 17/86 (20%)
leucine-rich repeat 475..524 CDD:275380 9/49 (18%)
leucine-rich repeat 500..519 CDD:275380 0/18 (0%)
leucine-rich repeat 525..548 CDD:275380 7/22 (32%)
leucine-rich repeat 549..574 CDD:275380 2/24 (8%)
LRR_8 573..633 CDD:290566 17/63 (27%)
leucine-rich repeat 575..598 CDD:275380 5/22 (23%)
leucine-rich repeat 599..622 CDD:275380 9/25 (36%)
LRR_8 622..683 CDD:290566 11/60 (18%)
leucine-rich repeat 623..646 CDD:275380 6/22 (27%)
leucine-rich repeat 647..730 CDD:275380 22/105 (21%)
leucine-rich repeat 648..673 CDD:275380 3/24 (13%)
leucine-rich repeat 674..705 CDD:275380 7/42 (17%)
LRR_8 704..763 CDD:290566 23/72 (32%)
leucine-rich repeat 731..754 CDD:275380 7/25 (28%)
LRR_8 753..813 CDD:290566 16/63 (25%)
leucine-rich repeat 755..778 CDD:275380 8/22 (36%)
leucine-rich repeat 779..802 CDD:275380 1/22 (5%)
leucine-rich repeat 803..823 CDD:275380 7/23 (30%)
leucine-rich repeat 852..876 CDD:275380 6/23 (26%)
LRR_8 854..910 CDD:290566 20/62 (32%)
LRR_RI <877..>1006 CDD:238064 41/140 (29%)
leucine-rich repeat 877..900 CDD:275380 8/29 (28%)
leucine-rich repeat 901..925 CDD:275380 8/23 (35%)
leucine-rich repeat 926..946 CDD:275380 4/19 (21%)
LRR_8 947..1004 CDD:290566 18/58 (31%)
leucine-rich repeat 947..970 CDD:275380 7/22 (32%)
leucine-rich repeat 971..993 CDD:275380 6/23 (26%)
LRR_8 992..1049 CDD:290566 18/66 (27%)
leucine-rich repeat 994..1014 CDD:275380 8/20 (40%)
leucine-rich repeat 1019..1042 CDD:275380 6/30 (20%)
Tlr8NP_001094479.1 PRK15370 <21..>218 CDD:185268 68/270 (25%)
leucine-rich repeat 62..85 CDD:275380 8/23 (35%)
leucine-rich repeat 86..119 CDD:275380 9/32 (28%)
leucine-rich repeat 120..140 CDD:275380 11/22 (50%)
PLN00113 141..>664 CDD:215061 169/731 (23%)
leucine-rich repeat 141..164 CDD:275380 6/27 (22%)
leucine-rich repeat 165..194 CDD:275380 12/69 (17%)
leucine-rich repeat 195..215 CDD:275380 9/19 (47%)
leucine-rich repeat 216..239 CDD:275380 6/27 (22%)
leucine-rich repeat 240..280 CDD:275380 11/52 (21%)
leucine-rich repeat 281..304 CDD:275380 7/22 (32%)
leucine-rich repeat 305..324 CDD:275380 5/18 (28%)
leucine-rich repeat 331..387 CDD:275380 23/100 (23%)
leucine-rich repeat 388..411 CDD:275380 6/22 (27%)
leucine-rich repeat 467..494 CDD:275380 10/27 (37%)
leucine-rich repeat 495..510 CDD:275380 3/14 (21%)
leucine-rich repeat 520..543 CDD:275380 9/46 (20%)
leucine-rich repeat 544..573 CDD:275380 7/28 (25%)
leucine-rich repeat 574..597 CDD:275380 8/46 (17%)
leucine-rich repeat 598..628 CDD:275380 8/29 (28%)
PRK15370 <629..>739 CDD:185268 33/110 (30%)
leucine-rich repeat 629..653 CDD:275380 8/23 (35%)
leucine-rich repeat 654..677 CDD:275380 5/22 (23%)
leucine-rich repeat 678..701 CDD:275380 7/22 (32%)
leucine-rich repeat 702..725 CDD:275380 6/23 (26%)
leucine-rich repeat 726..745 CDD:275380 8/18 (44%)
PCC 730..>813 CDD:188093 16/60 (27%)
TIR 868..1004 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 155 1.000 Inparanoid score I4210
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.050

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