DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and lrrc4.1

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:XP_005164844.1 Gene:lrrc4.1 / 565021 ZFINID:ZDB-GENE-041210-129 Length:858 Species:Danio rerio


Alignment Length:712 Identity:154/712 - (21%)
Similarity:237/712 - (33%) Gaps:255/712 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 ELEDLQITRASLS----GIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYS 510
            :|..:..||..|:    ||.|..       :.|:..||.|.|::.|:|..:.|            
Zfish    53 QLSKVVCTRRGLTRVPPGIPSTT-------RHLNLMENAIESVQVDSFRNLHH------------ 98

  Fly   511 GSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKL 575
                          |:.|....|.|..:...:|..|.||..|||.|||:..|..|.|  :..|||
Zfish    99 --------------LEVLQLGRNAIRQIEVGAFSGLTNLNTLELFDNRLTVVPSGAF--EYLSKL 147

  Fly   576 EEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADES 640
            .|:.||.|.:.||..:.|..:.:|.:|.|.:             |.:|||:|          |.:
Zfish   148 RELWLRNNPIESIPSYAFNRVPSLMRLDLGE-------------LRKLEYIS----------DGA 189

  Fly   641 FQNLPKLEILDMAF----NQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGM 701
            |:.|..|:.|::..    .::|||.    ..||                                
Zfish   190 FEGLVNLKYLNLGMCNIRGEMPNFT----PLVG-------------------------------- 218

  Fly   702 YHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIH 766
                ::.|::|.|....|.||.||           |.:||...            |:..|.  |.
Zfish   219 ----LEELEISENLFPEIKPGSFR-----------GLSSLKKL------------WIMNSQ--IG 254

  Fly   767 ELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFYNGGMEKLDV 831
            .::.:||.:...|..:...||.||.:|.|::.|::.|..:...||.         :|.|.:.|.:
Zfish   255 LIERNAFDDLASLVELNLAHNNLSSLPHDLYTPLKYLVELHLHHNP---------WNCGCDSLWL 310

  Fly   832 SHNMMLKIPSSSLSSLAALTLC-ELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVF 895
            :..:...||::|       |.| ..|      |..|.     :.|.|..||......::......
Zfish   311 ARWLREYIPTNS-------TCCGRCH------SPAHM-----RGRQLVELDRGDTGAMQCSAPFI 357

  Fly   896 ATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKYLREFRLGYNELPSI 960
            |..|          |||                    |||...|.|::.:               
Zfish   358 ADAP----------RDL--------------------NISAERVAELKCR--------------- 377

  Fly   961 PQELAHNMSNLRMLDLSNNDLTNVPLMTQALPHLRRLMLSGNPITSLNNNSFDGVN---EDLEML 1022
                ...||.:|.|      |.|..::|.|..|.|        :|.||:.:.:..|   .|..| 
Zfish   378 ----TAAMSAVRWL------LPNGTILTHASSHPR--------LTVLNDGTLNFSNVLAGDTGM- 423

  Fly  1023 DISNFRLHYFEYGCLDSLPHLRSLKLTAY-----SHLEHFNIPHLLRHHYNIRQLWIEAPQPFTR 1082
                       |.|:.|.....| ..:||     :.|...|:.:.......:.....|.|:|.|.
Zfish   424 -----------YTCMVSNAAGNS-NASAYLNVSAAELNTSNLSYFTTVTVEVLSPTSEMPKPKTT 476

  Fly  1083 IVKKGSGPT-----QEMQTLQLGNPTDLQREME------GHLP-SKLTNITFSGPQFTNLNE 1132
            ....|:..|     ...|.:.:..||.|.:..:      ..:| ||:|......|..|:|:|
Zfish   477 TTTAGASTTTTASPSVFQPVFISTPTVLLQSTDTPPSRPSVIPGSKVTTGKPPNPASTSLDE 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
leucine-rich repeat 376..401 CDD:275380
leucine-rich repeat 426..450 CDD:275378 154/712 (22%)
LRR_RI <448..651 CDD:238064 54/204 (26%)
leucine-rich repeat 451..474 CDD:275380 7/26 (27%)
LRR_8 473..559 CDD:290566 21/85 (25%)
leucine-rich repeat 475..524 CDD:275380 8/48 (17%)
leucine-rich repeat 500..519 CDD:275380 0/18 (0%)
leucine-rich repeat 525..548 CDD:275380 6/22 (27%)
leucine-rich repeat 549..574 CDD:275380 10/24 (42%)
LRR_8 573..633 CDD:290566 18/59 (31%)
leucine-rich repeat 575..598 CDD:275380 8/22 (36%)
leucine-rich repeat 599..622 CDD:275380 4/22 (18%)
LRR_8 622..683 CDD:290566 14/64 (22%)
leucine-rich repeat 623..646 CDD:275380 7/22 (32%)
leucine-rich repeat 647..730 CDD:275380 15/86 (17%)
leucine-rich repeat 648..673 CDD:275380 6/28 (21%)
leucine-rich repeat 674..705 CDD:275380 0/30 (0%)
LRR_8 704..763 CDD:290566 13/58 (22%)
leucine-rich repeat 731..754 CDD:275380 3/22 (14%)
LRR_8 753..813 CDD:290566 16/59 (27%)
leucine-rich repeat 755..778 CDD:275380 5/22 (23%)
leucine-rich repeat 779..802 CDD:275380 8/22 (36%)
leucine-rich repeat 803..823 CDD:275380 3/19 (16%)
leucine-rich repeat 852..876 CDD:275380 4/24 (17%)
LRR_8 854..910 CDD:290566 9/55 (16%)
LRR_RI <877..>1006 CDD:238064 23/128 (18%)
leucine-rich repeat 877..900 CDD:275380 4/22 (18%)
leucine-rich repeat 901..925 CDD:275380 3/23 (13%)
leucine-rich repeat 926..946 CDD:275380 5/19 (26%)
LRR_8 947..1004 CDD:290566 10/56 (18%)
leucine-rich repeat 947..970 CDD:275380 1/22 (5%)
leucine-rich repeat 971..993 CDD:275380 6/21 (29%)
LRR_8 992..1049 CDD:290566 12/59 (20%)
leucine-rich repeat 994..1014 CDD:275380 4/19 (21%)
leucine-rich repeat 1019..1042 CDD:275380 4/22 (18%)
lrrc4.1XP_005164844.1 LRRNT 43..77 CDD:214470 7/30 (23%)
leucine-rich repeat 54..73 CDD:275380 6/18 (33%)
leucine-rich repeat 75..98 CDD:275380 7/29 (24%)
LRR_8 76..133 CDD:290566 21/82 (26%)
LRR_RI 93..323 CDD:238064 80/361 (22%)
leucine-rich repeat 99..122 CDD:275380 6/22 (27%)
LRR_8 121..206 CDD:290566 34/109 (31%)
leucine-rich repeat 123..146 CDD:275380 10/24 (42%)
leucine-rich repeat 147..170 CDD:275380 8/22 (36%)
leucine-rich repeat 171..195 CDD:275380 11/46 (24%)
leucine-rich repeat 196..218 CDD:275380 5/25 (20%)
LRR_8 218..277 CDD:290566 20/119 (17%)
leucine-rich repeat 219..242 CDD:275380 9/33 (27%)
leucine-rich repeat 243..266 CDD:275380 6/36 (17%)
leucine-rich repeat 267..288 CDD:275380 7/20 (35%)
IG_like 361..443 CDD:214653 31/157 (20%)
Ig 372..443 CDD:299845 23/116 (20%)
STOP 616..799 CDD:283000
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24369
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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