DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and lrrc4cb

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:XP_005166545.1 Gene:lrrc4cb / 564462 ZFINID:ZDB-GENE-080327-5 Length:631 Species:Danio rerio


Alignment Length:700 Identity:146/700 - (20%)
Similarity:258/700 - (36%) Gaps:227/700 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   466 SHAFKHV----RGLK-----------RLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALP 515
            |:.|..|    ||||           .|:..:|.|..|:.|:|                      
Zfish    55 SNQFSKVICTRRGLKDVPDGVSTNTRYLNLQDNQIQVIKVDSF---------------------- 97

  Fly   516 AEPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISL 580
                :||..|:.|..|.|||.::...:|:.|.:|..|||.|||:..:..|.|  :..|||:|:.|
Zfish    98 ----KHLRHLEILQLSRNHIRNIEIGAFNGLTSLNTLELFDNRLTTIPNGAF--EYLSKLKELWL 156

  Fly   581 RFNHLTSISQHTFFDLEALRKLHLDD-NKIDKIERRAFMNLDELEYLSLRGNKINNLAD-ESFQN 643
            |.|.:.||....|..|.:||:|.|.: .::..|...||..|..|.||:|   .:.||.: .:.|.
Zfish   157 RNNPIESIPSDAFSRLPSLRRLDLGELKRLSYISSGAFQGLSNLRYLNL---GMCNLKEVPNIQP 218

  Fly   644 LPKLEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKI 708
            |.:|:.|:|:.|||.......|..:..|..|                 |        |.|:.::.
Zfish   219 LIRLDELEMSGNQLTVIQPSSFKGLVHLQKL-----------------W--------MMHAQVQT 258

  Fly   709 LDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYN---------- 763
            ::  .|:...:|         ||..|:|.:|:|.....|::..:.|||.:.|.:|          
Zfish   259 IE--RNSFDDLH---------SLRELNLAHNNLTFLPHDLYTPLHHLQRVHLHHNPWNCNCDILW 312

  Fly   764 ---WIHELDFDAFKNTK---------QLQLVFFGHNYLSDIPQDIFK---PVQGLRIVDFSHNHL 813
               |:.|   ....||.         .|:     ..|:.::.|..|:   ||    |::      
Zfish   313 LSWWLRE---TVPTNTSCCARCNSPPSLK-----GRYIGELDQSYFQCYAPV----IIE------ 359

  Fly   814 RGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFR--- 875
              .|.:|....||.       ..||..::|::|::.||      .|..|.|..::.:....:   
Zfish   360 --PPVDLNLTEGMA-------AELKCRTNSVTSVSWLT------PNGSIITHGTLKMRINVQNDG 409

  Fly   876 SLRYLDISY----NYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISL 936
            :|.:.:::.    .|...:.:.:..|... |:|:::             .::||    |....:.
Zfish   410 TLNFTNVTLQDTGTYTCYVSNMLGNTSAS-AILNVT-------------SVDNS----GFSYFTT 456

  Fly   937 STVPEIRLKYLREFRLGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVPLMTQALPHLRRLMLSG 1001
            .||..|......|.|        .|.:.:...:       |::.....|:.|:....:       
Zfish   457 VTVETIETPIDGESR--------TPVQPSFGWA-------SSSTTRGTPIATERAYTI------- 499

  Fly  1002 NPITSLN-NNSFDGVNEDLEMLDISNFRLHYFEYGCLDSLPHLRSLKLTAYSHLEHFNIPHLLRH 1065
             |:|.:: :.:.:|:.|.::...|.        .||..::..:.::.|..:..:..       :|
Zfish   500 -PVTEIDIDGALNGLEEVMKTTKII--------IGCFVAITLMAAVMLIIFYKMRK-------QH 548

  Fly  1066 HYNIRQLWIEAPQPFTRIVKKGSGPTQEMQTLQLGNPTDLQR--EMEGHL 1113
            |.                 :...||::.|:.:.:..  ||.|  .||.||
Zfish   549 HQ-----------------QDHDGPSRSMEIISVHE--DLTRVPAMESHL 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914
leucine-rich repeat 84..103 CDD:275380
leucine-rich repeat 104..128 CDD:275380
leucine-rich repeat 129..152 CDD:275380
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
PPP1R42 355..564 CDD:455733 30/112 (27%)
leucine-rich repeat 376..401 CDD:275380
leucine-rich repeat 426..450 CDD:275378
leucine-rich repeat 451..474 CDD:275380 3/11 (27%)
LRR_8 473..559 CDD:404697 26/96 (27%)
leucine-rich repeat 475..524 CDD:275380 10/59 (17%)
leucine-rich repeat 500..519 CDD:275380 0/18 (0%)
leucine-rich repeat 525..548 CDD:275380 8/22 (36%)
LRR <540..>834 CDD:443914 79/320 (25%)
leucine-rich repeat 549..574 CDD:275380 9/24 (38%)
leucine-rich repeat 575..598 CDD:275380 9/22 (41%)
leucine-rich repeat 599..622 CDD:275380 8/23 (35%)
leucine-rich repeat 623..646 CDD:275380 8/23 (35%)
leucine-rich repeat 647..730 CDD:275380 14/82 (17%)
leucine-rich repeat 648..673 CDD:275380 7/24 (29%)
leucine-rich repeat 674..705 CDD:275380 4/30 (13%)
LRR <730..1081 CDD:443914 63/383 (16%)
leucine-rich repeat 731..754 CDD:275380 6/22 (27%)
leucine-rich repeat 755..778 CDD:275380 8/44 (18%)
leucine-rich repeat 779..802 CDD:275380 6/25 (24%)
leucine-rich repeat 803..823 CDD:275380 3/19 (16%)
leucine-rich repeat 852..876 CDD:275380 3/26 (12%)
leucine-rich repeat 877..900 CDD:275380 3/26 (12%)
leucine-rich repeat 901..925 CDD:275380 2/23 (9%)
leucine-rich repeat 926..946 CDD:275380 4/19 (21%)
leucine-rich repeat 947..970 CDD:275380 3/22 (14%)
leucine-rich repeat 971..993 CDD:275380 3/21 (14%)
leucine-rich repeat 994..1014 CDD:275380 2/20 (10%)
leucine-rich repeat 1019..1042 CDD:275380 3/22 (14%)
lrrc4cbXP_005166545.1 LRRNT 48..81 CDD:214470 7/25 (28%)
LRR 76..>303 CDD:443914 77/293 (26%)
leucine-rich repeat 79..102 CDD:275380 8/48 (17%)
leucine-rich repeat 103..126 CDD:275380 8/22 (36%)
leucine-rich repeat 127..150 CDD:275380 9/24 (38%)
leucine-rich repeat 151..174 CDD:275380 9/22 (41%)
leucine-rich repeat 175..199 CDD:275380 8/23 (35%)
leucine-rich repeat 200..221 CDD:275380 8/23 (35%)
leucine-rich repeat 222..245 CDD:275380 7/22 (32%)
leucine-rich repeat 246..269 CDD:275380 7/58 (12%)
leucine-rich repeat 270..291 CDD:275380 6/20 (30%)
LRRCT 302..352 CDD:214507 9/57 (16%)
Ig 355..443 CDD:472250 21/113 (19%)
Ig strand B 372..376 CDD:409353 1/3 (33%)
Ig strand C 383..387 CDD:409353 1/3 (33%)
Ig strand E 409..413 CDD:409353 1/3 (33%)
Ig strand F 423..428 CDD:409353 1/4 (25%)
Ig strand G 436..439 CDD:409353 0/3 (0%)
Blue background indicates that the domain is not in the aligned region.

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