DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and slit1b

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_001030147.1 Gene:slit1b / 561685 ZFINID:ZDB-GENE-030722-4 Length:1532 Species:Danio rerio


Alignment Length:1285 Identity:271/1285 - (21%)
Similarity:453/1285 - (35%) Gaps:429/1285 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 LPQNDLVEIPSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLEDSLQTLILRENCISQLMSHSFSG 198
            :|:|    ||..:.|       |||..|::|||..|.|.||: .|:.|.|.:|.|..:...:||.
Zfish    52 VPRN----IPKTTER-------LDLNANNLTHIGKDDFAGLK-HLRILHLMDNQIVSIDRGAFSD 104

  Fly   199 LLILETLDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWS 263
            |..|:.|.|:.|.|.::...:|:.. |.|:||.|::|.:..||..|                   
Zfish   105 LKELDRLRLNRNRLQQLPELLFLKN-PALSRLDLSENNIQMIPRRA------------------- 149

  Fly   264 LSGNETYEIKASTKLNLDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIR 328
                    .:.:|  ::.||.|:.|||..:.               ||         ||:..|: 
Zfish   150 --------FRGAT--DIKNLQLDKNHISCIE---------------DG---------AFRAMRV- 179

  Fly   329 EIYMRYCGLTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTE 393
                                   |::|.|:.||::.:....||:...||                
Zfish   180 -----------------------LEVLTLNNNNISAIPISSFNHMPKLR---------------- 205

  Fly   394 TFNAVHYTLLKLDLSGDRNDPTNLQTLRK-MRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQIT 457
            ||. :|:..|:.|        ..|..|.: :|...:|.:....||   |...  .|:.|.:||..
Zfish   206 TFR-LHWNSLRCD--------CQLSWLSQWLRQRPALGLYTQCSS---PAHL--HGLNLAELQKK 256

  Fly   458 RASLSGIQSHAFKHVRGLKRLDFSEN--GISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLR 520
            ..:.:|             .||.|..  |::|..........::::..:      |..|.|.|..
Zfish   257 DFTCAG-------------ALDSSPQPCGLASGSCPPMCSCTNNIVDCR------GKGLTAIPAN 302

  Fly   521 HLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHL 585
            ...|:.|:....|.|.|:...:|...|.||.::|.:|:|.::....|.| :.| |..:.|..|.:
Zfish   303 MPESMTEIRLEQNGIKSVPPGAFSSYKRLRRIDLSNNQISEIAPDAFHG-LRS-LNSLVLYGNKI 365

  Fly   586 TSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEIL 650
            |.:.:..|..|.||..|.|:.|||..:....|.:|:.|..|||..|||..||..:|..|..::.|
Zfish   366 TDLPRGVFDGLSALELLLLNANKIHCVRVNVFQDLENLSLLSLYDNKIQTLAKGTFAPLKSIQTL 430

  Fly   651 DMAFNQ---------LPNF-NFDYFDQVGT-------LSNLNVNVSHNQIRQLMYNSSWS----- 693
            .:|.|.         |.:| ..:..:..|.       |:|..:    :||:...:..|.:     
Zfish   431 HLAQNPFVCDCGLKWLADFLRSNPIETSGARCSSPRRLANKRI----SQIKSKKFRCSAAKEQYY 491

  Fly   694 --GRNEHGGMYHSNIK------------ILDLSHNNISIIHPGYFRPAEISLTHLHLGYN--SLM 742
              |..:.......|.|            ::|.|:..::.. |.:.   .:|.|.|.|..|  |::
Zfish   492 IPGSEDTRMNKDCNSKPVCPPKCRCEATVVDCSNLRLTKF-PEHL---PLSTTELRLNNNDLSIL 552

  Fly   743 NTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVD 807
            ..| .:|..:.||:.::||.|.|.|::..||:....:..:....|.|..:...:|:.:.|||::.
Zfish   553 EAT-GLFRPLTHLKKINLSNNKITEIEDGAFEGASSVVELHLTANLLVSVRGGMFRGMDGLRMLM 616

  Fly   808 FSHNHLRGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSN 872
            ..:||:|.:                ||       ||.|.|                         
Zfish   617 LRNNHIRCV----------------HN-------SSFSGL------------------------- 633

  Fly   873 KFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLS 937
              :::|.|.:..|.|..|....|.::|.|:.|:|..|                            
Zfish   634 --QNVRLLSLYDNQLSTIMPGAFDSLPNLSTLNLLAN---------------------------- 668

  Fly   938 TVP---EIRLKYLREFRLGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVPLMTQALPHLRRLML 999
              |   :.||.:|.|:......:...|:  ..|.:.||          .:||...|.|       
Zfish   669 --PFSCDCRLSWLGEWLRSRQIVTGNPR--CQNPAFLR----------EIPLQDVAKP------- 712

  Fly  1000 SGNPITSLNNNSFDGV-NEDLEMLDISNFRLHYF--EYGCLDSLPHLRSLKLTAYSHLEHFNIPH 1061
                         |.: ::|:...|:|.......  :..|:||:....:..|:|.......|:..
Zfish   713 -------------DFICDKDVLEQDVSCIPKPQCPEQCTCVDSVVRCSNKHLSALPRGVPLNVTE 764

  Fly  1062 LLRHHYNIRQLWIEAPQPFTRIVKKGSGPTQEMQTLQLGNPTDLQREMEGHLPSKLTNITFSGPQ 1126
            |    |....:::..||..:..        :::|.|.|.|             :|::::|  ...
Zfish   765 L----YLDGNVFVSIPQELSAF--------RQLQLLDLSN-------------NKISSLT--NTS 802

  Fly  1127 FTNLNERILRGMRSPYLYMQLFNTSLQALPPNFFKYMGRVRNISLDIRYHNRNLKKIPNPNTGAV 1191
            |||:         |....:.|...:|:.:||..|..:..:|.:||    |..|:.:         
Zfish   803 FTNM---------SQLTTLILSYNALRCIPPLVFGGLSSLRLLSL----HGNNISE--------- 845

  Fly  1192 PYLPNSVFLTDLKMSH-----TDLNCDCDLGWVEFWQRK--RRQYI--CSSQTWTD------TVF 1241
              |...:|.....:||     ..|.|||.|.|:..|.:.  :...|  |:.....:      |..
Zfish   846 --LHQQIFRDAASLSHLAIGANPLYCDCRLRWLSDWVKSGYKEPGIARCAGPQGMEGKLLLTTPG 908

  Fly  1242 RTFM-----------------NSPCQVYGRHNCDEHDDDLRETRC-------------------- 1269
            .||.                 ::|||..||  |  |:|.|.:.:|                    
Zfish   909 NTFQCTGPVDASVSGKCSPCSSNPCQNQGR--C--HNDPLHQYKCSCPQGYKGRNCELSISACEA 969

  Fly  1270 ------------ENKGGQQLMEALKFD-LECGWDNANCREAAFVVVMVCV 1306
                        |::.|.:.:..|.|: |.|..|..:|.:...|...:||
Zfish   970 NPCVNGGTCRPEESRRGFRCVCPLGFEGLFCELDVDDCVDHQCVNGTICV 1019

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566 9/28 (32%)
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064 39/126 (31%)
leucine-rich repeat 129..152 CDD:275380 5/17 (29%)
LRR_8 152..212 CDD:290566 23/59 (39%)
leucine-rich repeat 153..177 CDD:275380 11/23 (48%)
leucine-rich repeat 178..201 CDD:275380 8/22 (36%)
LRR_8 202..261 CDD:290566 15/58 (26%)
leucine-rich repeat 202..226 CDD:275380 6/23 (26%)
leucine-rich repeat 227..250 CDD:275380 8/22 (36%)
leucine-rich repeat 251..279 CDD:275380 1/27 (4%)
leucine-rich repeat 280..326 CDD:275380 10/45 (22%)
LRR_8 326..386 CDD:290566 10/59 (17%)
leucine-rich repeat 327..348 CDD:275380 0/20 (0%)
leucine-rich repeat 352..375 CDD:275380 7/22 (32%)
leucine-rich repeat 376..401 CDD:275380 5/24 (21%)
leucine-rich repeat 426..450 CDD:275378 5/23 (22%)
LRR_RI <448..651 CDD:238064 55/204 (27%)
leucine-rich repeat 451..474 CDD:275380 4/22 (18%)
LRR_8 473..559 CDD:290566 20/87 (23%)
leucine-rich repeat 475..524 CDD:275380 9/50 (18%)
leucine-rich repeat 500..519 CDD:275380 3/18 (17%)
leucine-rich repeat 525..548 CDD:275380 5/22 (23%)
leucine-rich repeat 549..574 CDD:275380 7/24 (29%)
LRR_8 573..633 CDD:290566 21/59 (36%)
leucine-rich repeat 575..598 CDD:275380 6/22 (27%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
LRR_8 622..683 CDD:290566 19/77 (25%)
leucine-rich repeat 623..646 CDD:275380 11/22 (50%)
leucine-rich repeat 647..730 CDD:275380 17/118 (14%)
leucine-rich repeat 648..673 CDD:275380 7/41 (17%)
leucine-rich repeat 674..705 CDD:275380 4/37 (11%)
LRR_8 704..763 CDD:290566 17/72 (24%)
leucine-rich repeat 731..754 CDD:275380 7/24 (29%)
LRR_8 753..813 CDD:290566 16/59 (27%)
leucine-rich repeat 755..778 CDD:275380 8/22 (36%)
leucine-rich repeat 779..802 CDD:275380 3/22 (14%)
leucine-rich repeat 803..823 CDD:275380 5/19 (26%)
leucine-rich repeat 852..876 CDD:275380 0/23 (0%)
LRR_8 854..910 CDD:290566 10/55 (18%)
LRR_RI <877..>1006 CDD:238064 24/131 (18%)
leucine-rich repeat 877..900 CDD:275380 6/22 (27%)
leucine-rich repeat 901..925 CDD:275380 4/23 (17%)
leucine-rich repeat 926..946 CDD:275380 3/22 (14%)
LRR_8 947..1004 CDD:290566 10/56 (18%)
leucine-rich repeat 947..970 CDD:275380 4/22 (18%)
leucine-rich repeat 971..993 CDD:275380 5/21 (24%)
LRR_8 992..1049 CDD:290566 8/59 (14%)
leucine-rich repeat 994..1014 CDD:275380 0/19 (0%)
leucine-rich repeat 1019..1042 CDD:275380 5/24 (21%)
slit1bNP_001030147.1 LRR_8 306..365 CDD:290566 18/60 (30%)
LRR_4 329..369 CDD:289563 13/41 (32%)
leucine-rich repeat 331..354 CDD:275380 7/23 (30%)
LRR_8 353..437 CDD:290566 30/84 (36%)
leucine-rich repeat 355..375 CDD:275380 5/19 (26%)
leucine-rich repeat 403..426 CDD:275380 11/22 (50%)
leucine-rich repeat 427..482 CDD:275380 10/58 (17%)
TPKR_C2 435..>465 CDD:301599 4/29 (14%)
LRR_RI <511..625 CDD:238064 29/118 (25%)
leucine-rich repeat 519..538 CDD:275380 3/22 (14%)
leucine-rich repeat 539..563 CDD:275380 7/24 (29%)
LRR_8 562..622 CDD:290566 16/59 (27%)
leucine-rich repeat 564..587 CDD:275380 8/22 (36%)
leucine-rich repeat 588..611 CDD:275380 3/22 (14%)
LRR_8 611..670 CDD:290566 23/138 (17%)
leucine-rich repeat 612..635 CDD:275380 11/72 (15%)
leucine-rich repeat 636..659 CDD:275380 6/22 (27%)
leucine-rich repeat 660..753 CDD:275380 25/154 (16%)
LRRCT 668..717 CDD:214507 15/110 (14%)
LRRNT 732..764 CDD:214470 6/31 (19%)
leucine-rich repeat 754..784 CDD:275380 5/41 (12%)
LRR_8 783..843 CDD:290566 19/87 (22%)
LRR_4 784..825 CDD:289563 13/64 (20%)
leucine-rich repeat 785..808 CDD:275380 9/46 (20%)
leucine-rich repeat 809..829 CDD:275380 5/19 (26%)
leucine-rich repeat 833..856 CDD:275380 7/37 (19%)
LRRCT 865..914 CDD:214507 12/48 (25%)
EGF_CA 929..961 CDD:238011 10/35 (29%)
EGF_CA 968..1001 CDD:238011 5/32 (16%)
EGF_CA 1003..1039 CDD:238011 5/17 (29%)
EGF_CA <1051..1079 CDD:238011
LRRNT 30..61 CDD:214470 4/12 (33%)
leucine-rich repeat 41..58 CDD:275380 3/9 (33%)
leucine-rich repeat 60..83 CDD:275380 12/30 (40%)
LRR_8 61..118 CDD:290566 24/64 (38%)
LRR_4 61..98 CDD:289563 17/44 (39%)
LRR_RI <84..217 CDD:238064 48/227 (21%)
leucine-rich repeat 84..107 CDD:275380 8/22 (36%)
leucine-rich repeat 108..131 CDD:275380 6/23 (26%)
LRR_8 130..190 CDD:290566 25/136 (18%)
leucine-rich repeat 132..155 CDD:275380 9/51 (18%)
leucine-rich repeat 156..179 CDD:275380 10/46 (22%)
leucine-rich repeat 180..203 CDD:275380 7/22 (32%)
leucine-rich repeat 204..247 CDD:275380 14/72 (19%)
LRRCT 212..260 CDD:214507 13/60 (22%)
leucine-rich repeat 248..330 CDD:275380 19/100 (19%)
LRRNT 278..309 CDD:214470 5/36 (14%)
EGF_CA 1082..1118 CDD:238011
LamG 1160..1314 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.